PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0296731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23680.1 Da PI: 9.5026 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngi+KKA+E+ vLCda+v++ii++s+gk+ ey+s RcHm_v2.0_Chr6g0296731 9 KRIENSSNRQVTYSKRKNGIIKKAKEITVLCDAKVSLIIIASSGKMVEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 79.4 | 9.1e-27 | 72 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 y+++sgk+l++ak+e+l++e++++kk ++ +q e+Rhl+Ged++sL++ +L+ Le+++e++l +iR++ ++++ + e+ + e+e+ RcHm_v2.0_Chr6g0296731 72 YHSQSGKRLWDAKHENLCNEVDRVKKDNDGMQIELRHLKGEDITSLNHVDLMALEEAIENGLASIRDRMSKYMDAVRENNRALEDEN 158 78999********************************************************************************** PP K-box 88 qeenkaLrkkl 98 ++ +++k++ RcHm_v2.0_Chr6g0296731 159 KRLAYQMHKMM 169 99999888875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MGRGKIEIKR IENSSNRQVT YSKRKNGIIK KAKEITVLCD AKVSLIIIAS SGKMVEYCSG 60 PQETRMKILD KYHSQSGKRL WDAKHENLCN EVDRVKKDND GMQIELRHLK GEDITSLNHV 120 DLMALEEAIE NGLASIRDRM SKYMDAVREN NRALEDENKR LAYQMHKMMK YEENLRDMNY 180 NNNNQIPFAL RVQPNQPNLH DRM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-76 | MIKC_MADS family protein |