PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0296721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 24001 Da    PI: 7.0353
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0296721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.6e-26958150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            krien++nrqvtf+kR+ngi+KKA+E+ vLCda+v++ii +s+gk+ ey 
  RcHm_v2.0_Chr6g0296721  9 KRIENSTNRQVTFAKRKNGIIKKAKEITVLCDAKVSLIINASSGKMVEYN 58
                            79***********************************************6 PP
2K-box83.45e-2872169198
                   K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                             y++++gk+l++ak+e+l++el+++kke++ +q ++Rhl+Ged++sL++ eL  Le++Le++l+++R kK++++ +q +  +  e+e 
  RcHm_v2.0_Chr6g0296721  72 YHSQTGKKLWDAKHENLSNELDRIKKENDGMQVQLRHLKGEDITSLNHSELGDLEEALENGLTSVRGKKSDVVQMQRDSHKAAEEEY 158
                             78899999******************************************************************************* PP

                   K-box  88 qeenkaLrkkl 98 
                             ++ n +L+k+ 
  RcHm_v2.0_Chr6g0296721 159 DRLNYELHKQT 169
                             ********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MGRGKIEIKR IENSTNRQVT FAKRKNGIIK KAKEITVLCD AKVSLIINAS SGKMVEYNSG  60
SPETLLEILD RYHSQTGKKL WDAKHENLSN ELDRIKKEND GMQVQLRHLK GEDITSLNHS  120
ELGDLEEALE NGLTSVRGKK SDVVQMQRDS HKAAEEEYDR LNYELHKQTV KSEENLRDME  180
YHQRMSQMSF FRVQPIQPNL HDDHDRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-74MIKC_MADS family protein