PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0296451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 280aa    MW: 32933.8 Da    PI: 10.1001
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0296451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.25.8e-151150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i n s r+ tf kR++g++KK +E+ +LCd+++a ii+s+
  RcHm_v2.0_Chr6g0296451 11 IANVSSRKNTFRKRKKGLMKKMKEITTLCDIKAAAIIYSP 50
                            88999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MARRKVRLHY IANVSSRKNT FRKRKKGLMK KMKEITTLCD IKAAAIIYSP FETEPEVFPN  60
HPEAHEMLTR FRNMPEMDKT RRMMDQEIFL RQRIDKTREQ IRKQKRDNRE KQITQVMFDC  120
LKGKTISNLE KKDLNDLTFI IEQNLRELDI KEKAMEEHKQ EENQQNQLNQ MPGVPAAVEL  180
DLTRNAFGEG TSRGVGQQQH PATMDAQSME QMHYQMMQVA AQRQPQQMLQ QQPWFMDIMN  240
PPSPQTMDFL QPLPPLPPGV FGDNSSRNAT WPNNSSFRFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVRLHYIANVSSRKNTFRKRK
22226RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-44M-type_MADS family protein