PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0296351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

M-type_MADS

Protein Properties

Length: 366aa MW: 42262.1 Da PI: 8.5169

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0296351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.2	2.4e-19	62	103	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i +++ r +tf kR++gilKKA+E S+LC+++ ++ii+++++ RcHm_v2.0_Chr6g0296351 62 IADERSRRITFQKRKKGILKKAYEFSTLCGVDMCLIIYGPKQ 103 789999*********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MFGVFIEIFN GRTIRGFRVS NTLFLVLLGF VLYDRSFFKG SFSFLDQNIM GRGGGKLNMQ 60 LIADERSRRI TFQKRKKGIL KKAYEFSTLC GVDMCLIIYG PKQSDRRPTE LHTWPQNPDE 120 VNRIIGKFKL NNKPATKTYN LSDWLHEQKV KMDAKISKLR SDMYEAKYPT WDDRINDFSE 180 HQLEELVHVL DQKIESGKRT LNNVRAPPKL LLGGNHVADV TSQKLYNHMQ DYAHYLGEYE 240 DQKPSYVSMM DMQMPFSIDQ PTSYSQTLQY DSELNSMMTN PLMGYPSTYY DPSGASQMIQ 300 SPAENNPNMM MFNSVPSSSV SHYAQLIQKP MSYTQYPMNI STISSQLGNS QVKDREDDDL 360 IHNKMV

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MFGVFIEIFN GRTIRGFRVS NTLFLVLLGF VLYDRSFFKG SFSFLDQNIM GRGGGKLNMQ  60
LIADERSRRI TFQKRKKGIL KKAYEFSTLC GVDMCLIIYG PKQSDRRPTE LHTWPQNPDE  120
VNRIIGKFKL NNKPATKTYN LSDWLHEQKV KMDAKISKLR SDMYEAKYPT WDDRINDFSE  180
HQLEELVHVL DQKIESGKRT LNNVRAPPKL LLGGNHVADV TSQKLYNHMQ DYAHYLGEYE  240
DQKPSYVSMM DMQMPFSIDQ PTSYSQTLQY DSELNSMMTN PLMGYPSTYY DPSGASQMIQ  300
SPAENNPNMM MFNSVPSSSV SHYAQLIQKP MSYTQYPMNI STISSQLGNS QVKDREDDDL  360
IHNKMV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	77	RSRRITFQKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	5e-23	M-type_MADS family protein