PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0296251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 256aa    MW: 29224.9 Da    PI: 10.8152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0296251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.2e-1714100196
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ffk+l     ++++ l++p  f+++ +   ++  t +l+ +sg+ W v+l  +k+++r ++ kGW+eFvk + L++gDf++F+ dg 
  RcHm_v2.0_Chr6g0296251  14 FFKAL--MGDFSQH-LRIPSAFIKNLN--RRSLHTCRLKGPSGQCWVVEL--EKRGNRLFFHKGWEEFVKHHPLEVGDFLIFSCDGV 93 
                             56666..4455555.********6554..446679***************..*******************************8887 PP

                             SEE..EEEE CS
                      B3  88 sefelvvkv 96 
                             s f   v++
  RcHm_v2.0_Chr6g0296251  94 SMF--DVTI 100
                             766..5555 PP
2B334.34.3e-111762431687
                             EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             +++p + + + g+k   ++ ++++d+   sW ++l  r + +r+++++G ++ +kan+   gD+v+F++++ 
  RcHm_v2.0_Chr6g0296251 176 VYIPTEVVIAEGLK--AGTAIKIQDTFEMSWHLRL--RANHDRVLMRSGLSNICKANKTSHGDTVIFEFVKP 243
                             68888888888888..4568***************..*******************************8763 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MARKTEHPAR RQAFFKALMG DFSQHLRIPS AFIKNLNRRS LHTCRLKGPS GQCWVVELEK  60
RGNRLFFHKG WEEFVKHHPL EVGDFLIFSC DGVSMFDVTI YGKTFCEKNV KAAKRRSGSN  120
GIAAKRSGKL PRRSDSHADK RRAVDGVEET SLRPIPFQSK NSFICRVLTA RTLYEVYIPT  180
EVVIAEGLKA GTAIKIQDTF EMSWHLRLRA NHDRVLMRSG LSNICKANKT SHGDTVIFEF  240
VKPRVVQLHI IRAGVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-19B3 family protein