PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0295031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 85aa    MW: 10135.9 Da    PI: 10.3769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0295031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-161150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i nks r  tf kR++g+lKK +E+ +LCd+++a ii+s+
  RcHm_v2.0_Chr6g0295031 11 IVNKSSRRNTFRKRKEGLLKKVYEITTLCDIKAAAIIYSP 50
                            78************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    
MARRKVKLQY IVNKSSRRNT FRKRKEGLLK KVYEITTLCD IKAAAIIYSP FDVEQEVFPS  60
HPEVHEMLMR FQDMSEKDKT KNMVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVKLQYIVNKSSRRNTFRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-24M-type_MADS family protein