PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0294921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 441aa MW: 48120.2 Da PI: 9.721

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0294921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	204	226	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg F +nL+ H+ + H RcHm_v2.0_Chr6g0294921 204 SCPECGAIFMKAENLELHQALrH 226 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MSTTMAKLKS QKKPTKPTHQ KSKKQNQNQN QNPQKPEIKP PYWAVVRGLL TCKHHQAVQL 60 LQQEGKHHPQ KQQNEQLASM EEMSAAKKCK KMRCSGSLCS NTKITHRPEL GSPEVHKKRA 120 SSMGSSSSTN ETSSRSMKAP LHELNGVVST SSSSLSASSN ISSAGGSFRA MPFRRFSGCY 180 ECRMVVDPVL GFARDPSLRG SICSCPECGA IFMKAENLEL HQALRHAVSE LGPEDTSKNI 240 VEIIFQSSWL KKQAPICKID RILKVHNTQK TISKFEEYRD SIKAKATKLQ LPNKKHPRCI 300 ADGNELLRFH CTTFDCSLGL NGSSNLCNSI PSCNVCSIIK NGFKVDRSEL AGSNGILTTA 360 TSGRAHDMAA VAAEDGRMAM LVCRVIAGRV KKNVDGQGGG GAVEEYDSVA GAVGVYSNLD 420 ELYVFNPKAI LPCFVVIYGG F

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MSTTMAKLKS QKKPTKPTHQ KSKKQNQNQN QNPQKPEIKP PYWAVVRGLL TCKHHQAVQL  60
LQQEGKHHPQ KQQNEQLASM EEMSAAKKCK KMRCSGSLCS NTKITHRPEL GSPEVHKKRA  120
SSMGSSSSTN ETSSRSMKAP LHELNGVVST SSSSLSASSN ISSAGGSFRA MPFRRFSGCY  180
ECRMVVDPVL GFARDPSLRG SICSCPECGA IFMKAENLEL HQALRHAVSE LGPEDTSKNI  240
VEIIFQSSWL KKQAPICKID RILKVHNTQK TISKFEEYRD SIKAKATKLQ LPNKKHPRCI  300
ADGNELLRFH CTTFDCSLGL NGSSNLCNSI PSCNVCSIIK NGFKVDRSEL AGSNGILTTA  360
TSGRAHDMAA VAAEDGRMAM LVCRVIAGRV KKNVDGQGGG GAVEEYDSVA GAVGVYSNLD  420
ELYVFNPKAI LPCFVVIYGG F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2 family protein