PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0292551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 676aa    MW: 75288 Da    PI: 6.2046
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0292551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B383.42.2e-26130231199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+ltpsd++++g +++pk++aee+        +++ +  +lt +d++g +W +++iyr++++r++lt+GW+ Fv a++L  gD +
  RcHm_v2.0_Chr6g0292551 130 FSKILTPSDTSTHGGFSVPKRHAEECfpplemfHQPPVQ--ELTTKDLHGVEWHFRHIYRGQPKRHLLTSGWSTFVTAKKLVPGDAC 214
                             88*****************************96444444..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   + +++el+v+++r+
  RcHm_v2.0_Chr6g0292551 215 IFV--RGENGELCVGICRA 231
                             ***..449999******97 PP
2Auxin_resp100.22.7e-33256338183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a ha+ t+++F+v+Y+P++s+  F++++++++k+ k ++svGmRf+m+fe e+++e+r+ Gt+++++d dpvrWp S+W +Lk
  RcHm_v2.0_Chr6g0292551 256 AFHAICTGTMFTVYYRPWTSPVPFIIPYDQYMKSPKDEYSVGMRFRMRFEAEECAEKRCEGTIIDIKDKDPVRWPSSEWGCLK 338
                             6799****************************************************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    
MAGSVSGEQQ SAYPVNNRQG DKDDLYNQLW HTCAGSNIYV PRPGDKVFYF AQGHIEQVEA  60
YADPDSNAAM PKYNLPPKIL CHVVNVQLKA EVHTDEVFAQ ITLLPVTQQD QLSFEDENAP  120
SLPHRTRTCF SKILTPSDTS THGGFSVPKR HAEECFPPLE MFHQPPVQEL TTKDLHGVEW  180
HFRHIYRGQP KRHLLTSGWS TFVTAKKLVP GDACIFVRGE NGELCVGICR ATKTQDNATA  240
SLISGNSMQH GILASAFHAI CTGTMFTVYY RPWTSPVPFI IPYDQYMKSP KDEYSVGMRF  300
RMRFEAEECA EKRCEGTIID IKDKDPVRWP SSEWGCLKVQ WDTTSATLLH SERLSPWNIE  360
PAESTKTKRT SFPVPPHKRP RIPDLSLPVF SGLARNGPFP LIMPQRREKV FQGQEISETH  420
ANELGAPMYD PLHQSPSSSI AFSSENMLTP GHINQWPSQL TTFGVVDSVP FSRSMSVPNI  480
NSSGSQELSA SKLRSETQGP FVPSNTLMLF GVNLDNSHSE LPSPQVANSS GHLSPCSIPP  540
ISQSSVSETV QLSETSKSIS CVLSETQCKK CCSVSNRSCI KVLKYGAALG RSVDLTRFDG  600
YGELISELDQ MFDFEGRLID GSSGWQVTYM DDEGDMMLIG DYLWHEFLSM VRKMFISPKD  660
QEIDSLNPGS PNATSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-157ARF family protein