PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0289301

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 350aa MW: 39325.4 Da PI: 10.1543

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0289301	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.4e-31	284	341	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ RcHm_v2.0_Chr6g0289301 284 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 341 99*********************9988**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MEEVEEANKA AVASCHRVLN LLSQPQDQVQ FRNLKAETGE AVFRFKKVAS LLNTGLGHAR 60 VRKLKKLQIP FPESVLLDNP NCTTDHHSKN PHFLQSRFAE NPTQDLSLNV RNSLSLGNPS 120 LELSTNGKTP IQLQQALPAH YHFLQQQQQH QQQQQQQRLL LQQQHMKQQA EMMYRRSNSG 180 INLNFDSSSC TPTMSSTRSF ISSLSIDGSV ANLEGNSFHL IGAPISSSDQ NSQHKRKCSA 240 RGDDGSAKCG SSGRCHCSKK RKHRVKRSIK VPAISNKLAD IPPDDYSWRK YGQKPIKGSP 300 HPRGYYKCSS MRGCPARKHV ERCLEEPSML IVTYEGEHNH PRIPSQSTTT

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MEEVEEANKA AVASCHRVLN LLSQPQDQVQ FRNLKAETGE AVFRFKKVAS LLNTGLGHAR  60
VRKLKKLQIP FPESVLLDNP NCTTDHHSKN PHFLQSRFAE NPTQDLSLNV RNSLSLGNPS  120
LELSTNGKTP IQLQQALPAH YHFLQQQQQH QQQQQQQRLL LQQQHMKQQA EMMYRRSNSG  180
INLNFDSSSC TPTMSSTRSF ISSLSIDGSV ANLEGNSFHL IGAPISSSDQ NSQHKRKCSA  240
RGDDGSAKCG SSGRCHCSKK RKHRVKRSIK VPAISNKLAD IPPDDYSWRK YGQKPIKGSP  300
HPRGYYKCSS MRGCPARKHV ERCLEEPSML IVTYEGEHNH PRIPSQSTTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-116	WRKY family protein