PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0288981

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 477aa MW: 52862.4 Da PI: 5.5158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0288981	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	4e-13	328	374	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq RcHm_v2.0_Chr6g0288981 328 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 374 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MGEKLWVNEE EKVILESVLG TEACQVLISL ASENLLSDLA RPPGQLGVQQ GLSQLVQGSS 60 WDYAVFWQVV GLKSGAAALI WGDGHCRDSK GGGVGDESSS RDSNLEGVQK KNVEVRKWVL 120 GKLHSCFGGS GEDNYVRRLD RLSDVEMFYL TSMYFKFQLD SPYGPGESYK SCKSIWVSNV 180 ASCLHHYQSR TFLARLAGFQ TVVFVPMKSG VVELGSIKSI PEEQNIVDVV RSVFGESSSV 240 QAKVETDSSF PSESFDLQAI GTSNGCRTED NEVKLFPHLS QIMSGNFSST AGVSSSELPK 300 DESSAQIDER KPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA 360 SLLGDAITYI NDLQMKIRVM ETEKQMGNSS QMQFPVPEID FQERHEDAVV RMNCPLDSHP 420 VSDVIRTLKE HNIVAQDTNV SVTDDDTVIH TFSIHTQGGD AEQLKEKLVA SLSKSSM

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MGEKLWVNEE EKVILESVLG TEACQVLISL ASENLLSDLA RPPGQLGVQQ GLSQLVQGSS  60
WDYAVFWQVV GLKSGAAALI WGDGHCRDSK GGGVGDESSS RDSNLEGVQK KNVEVRKWVL  120
GKLHSCFGGS GEDNYVRRLD RLSDVEMFYL TSMYFKFQLD SPYGPGESYK SCKSIWVSNV  180
ASCLHHYQSR TFLARLAGFQ TVVFVPMKSG VVELGSIKSI PEEQNIVDVV RSVFGESSSV  240
QAKVETDSSF PSESFDLQAI GTSNGCRTED NEVKLFPHLS QIMSGNFSST AGVSSSELPK  300
DESSAQIDER KPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA  360
SLLGDAITYI NDLQMKIRVM ETEKQMGNSS QMQFPVPEID FQERHEDAVV RMNCPLDSHP  420
VSDVIRTLKE HNIVAQDTNV SVTDDDTVIH TFSIHTQGGD AEQLKEKLVA SLSKSSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	318	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-147	bHLH family protein