PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0287671
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 502aa    MW: 56435.7 Da    PI: 6.6498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0287671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.19.6e-1121374951374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                             l++lL+ecA a+s ++  +a+++L +l ++asp+g +  +R++ayf++A+++r+++s+ ++++ l   ++          a+++f+ 
  RcHm_v2.0_Chr6g0287671 137 LITLLFECAVAISVENPGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMSSRVLNSWLGICSPLVNYKS-------IHGAFQVFNT 216
                             5789*******************************9999***********************87765554.......467999**** PP

                    GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                             +sP++kf+h+t NqaIlea+++ +rvHiiD+di+qGlQWpaL++ La+R egpp++R+Tg+g+    s+e l etg++L++fA++lg
  RcHm_v2.0_Chr6g0287671 217 ISPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRMEGPPHVRMTGFGA----SSEVLLETGKQLSNFARRLG 299
                             ***************************************************************....9******************* PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             ++fef++++ k  + l++++ +v++gE++aV++    h+l+d +++       ++kl+ +lsP++v++veq+++hn++sFl+rf+ +
  RcHm_v2.0_Chr6g0287671 300 LSFEFHPITRKFGDHLDTSMVQVRRGETVAVHWLQ--HSLYDATGPDWR----TMKLIEELSPRIVTLVEQDMSHNGGSFLDRFVGS 380
                             *******9999999********************9..999988888877....********************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk. 345
                             l+yys++fdslea lp+++ +r+ vE+ l+ rei n++a  g +r  +  ++++Wr+ l++   F +v +s + ++qa+l+l++++ 
  RcHm_v2.0_Chr6g0287671 381 LHYYSTMFDSLEAYLPSDNPNRHLVEHSLMYREINNILAVGGPARSGED-KFRHWRSELGAsNSFMQVGMSGNSMAQAQLILNMFPp 466
                             ********************************************77665.5********98578*********************** PP

                    GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             s+gy++ + +g++ lgWkd +L+++SaW+
  RcHm_v2.0_Chr6g0287671 467 SNGYNLVQGDGTIRLGWKDTSLYVASAWT 495
                             ****************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    
MKAEFEMVHG TVNMIQPHET NWINNSTSVN PFPKPVSDLS QWVEHITKQL IDDLPETATT  60
TADTLHTAAT SGDQYFIPPS HSGEFSPRKA PRKNYGDDTS ADRADYDLQW GNELQLHAEN  120
NRRDRGLSKL DQHGLTLITL LFECAVAISV ENPGEAHRML LELTQMASPY GPSCAERVVA  180
YFAKAMSSRV LNSWLGICSP LVNYKSIHGA FQVFNTISPF IKFAHFTSNQ AILEAFHRRD  240
RVHIIDLDIM QGLQWPALFH ILATRMEGPP HVRMTGFGAS SEVLLETGKQ LSNFARRLGL  300
SFEFHPITRK FGDHLDTSMV QVRRGETVAV HWLQHSLYDA TGPDWRTMKL IEELSPRIVT  360
LVEQDMSHNG GSFLDRFVGS LHYYSTMFDS LEAYLPSDNP NRHLVEHSLM YREINNILAV  420
GGPARSGEDK FRHWRSELGA SNSFMQVGMS GNSMAQAQLI LNMFPPSNGY NLVQGDGTIR  480
LGWKDTSLYV ASAWTCSHAS SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-140GRAS family protein