PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0283511

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 549aa MW: 59556.3 Da PI: 7.3283

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0283511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.7e-09	371	418	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RcHm_v2.0_Chr6g0283511 371 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 418 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MENNFFLNAG IPPSLHFEPA QSMPSWRSLS TAMDIQSADR NCSSERSPEC FYNPNWDNKS 60 TDPQSVHFES ALSSMVSSPV ASNSNISNES FVIRELIGKL GSIGNSSNEI SATIPANNNS 120 YMGGGNGSTN TSCYSTPLNS PPKLNLPIVD HHLAKEKPPS LGKSMPLNSS VAEFSADPGF 180 AERAAKFSCF GSRSFNGRTT QLGTHTNNSG VAYRSNQLIL GNGNKLPRVS SSPSLKALGS 240 QTEQRTPQLP NAREESKSTV ASEQQNPIGE TGLVPSSSTD MSSRKRKAAS KGKAKDPVKV 300 AEASDISDLN AKRCKPNEGN VNNENGSVKA EEDTKGSTSS DEKPGKTGSK PPEPLKDYIH 360 VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ 420 VEFLSMKLSS VNTNRLDFNM DALMSKEIFQ QQISSLPHPI FPSDSSAQAI YGHQQSPAHC 480 TVDPLDSALC QSLGMQLPPL NAFSEAMPQY PGFGEDDLQT IVQMGFGQNP NKETEFHGSN 540 QASHMKIER

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MENNFFLNAG IPPSLHFEPA QSMPSWRSLS TAMDIQSADR NCSSERSPEC FYNPNWDNKS  60
TDPQSVHFES ALSSMVSSPV ASNSNISNES FVIRELIGKL GSIGNSSNEI SATIPANNNS  120
YMGGGNGSTN TSCYSTPLNS PPKLNLPIVD HHLAKEKPPS LGKSMPLNSS VAEFSADPGF  180
AERAAKFSCF GSRSFNGRTT QLGTHTNNSG VAYRSNQLIL GNGNKLPRVS SSPSLKALGS  240
QTEQRTPQLP NAREESKSTV ASEQQNPIGE TGLVPSSSTD MSSRKRKAAS KGKAKDPVKV  300
AEASDISDLN AKRCKPNEGN VNNENGSVKA EEDTKGSTSS DEKPGKTGSK PPEPLKDYIH  360
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ  420
VEFLSMKLSS VNTNRLDFNM DALMSKEIFQ QQISSLPHPI FPSDSSAQAI YGHQQSPAHC  480
TVDPLDSALC QSLGMQLPPL NAFSEAMPQY PGFGEDDLQT IVQMGFGQNP NKETEFHGSN  540
QASHMKIER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-97	bHLH family protein