PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0277581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 582aa    MW: 64772.7 Da    PI: 4.6379
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0277581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4471.3e-1362135822374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++lL++cA a+s+g+ e+a++++++l++l+s +gdp qR+aay++e+L ar+a+s++ ly+al+++e +   ss +laa+++++ev+
  RcHm_v2.0_Chr6g0277581 213 KQLLFDCAGALSEGNIEEASTIINELRQLVSIQGDPPQRIAAYMVEGLVARMASSGKYLYRALKCKEPP---SSYRLAAMQVLFEVC 296
                             589*****************************************************************9...9************** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P++kf++++aN aI ea++ e+ vHiiDfdi+qG Q+++L+q+La+ p++pp+lR+Tgv++pes+      l+++g+rL+++Ae lg
  RcHm_v2.0_Chr6g0277581 297 PCFKFGFMAANGAIIEATKDEKSVHIIDFDINQGNQYITLIQELAELPGKPPHLRLTGVDDPESVqrPVGGLNTIGQRLEQLAEGLG 383
                             ***************************************************************99888899**************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             v+fef++ va++++ +++ +L++++gEal++n+++qlh+++desvs+ ++rd++L+l kslsPk+v+vveq++++n+++F+ rf+ea
  RcHm_v2.0_Chr6g0277581 384 VSFEFQA-VASKTSIVSPPMLHCRQGEALVINFAFQLHHMPDESVSTVNQRDQLLRLAKSLSPKLVTVVEQDVNTNTTPFFPRFVEA 469
                             *******.7****************************************************************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                              +yysa+fdslea +pres++r++vE+++l+r+ivn+vaceg+er+er e ++kWr+r+ +aGF++ p+s++++++++ l+r++ ++
  RcHm_v2.0_Chr6g0277581 470 YNYYSAVFDSLEAAIPRESQDRMNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMAMAGFTSTPMSKSITDSIRDLIRMYCDR 556
                             *************************************************************************************66 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              y+++ee g l +gW+d++L+++SaWr
  RcHm_v2.0_Chr6g0277581 557 -YKIKEEMGGLHFGWEDKSLIVASAWR 582
                             .*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MSLVRPVELS ATSYRKSKLY SLKGSNDTNT QTFGADKNNT MYTTDSYSTE SYEFLDSPSE  60
EVVHPSSSSI SGSSFNEQAA SLYPRRAGSV SSLTTQNPSS ASFMSMRLHD AYQTNIDSDY  120
LESQSPEAVS FDDGKMKLKL QELERALLDD NDAEDDEEMI GNGQSMEIDG EWTEPIQNAL  180
LHDSPKESSS SDSYLSSISS NKEISRVSPR TPKQLLFDCA GALSEGNIEE ASTIINELRQ  240
LVSIQGDPPQ RIAAYMVEGL VARMASSGKY LYRALKCKEP PSSYRLAAMQ VLFEVCPCFK  300
FGFMAANGAI IEATKDEKSV HIIDFDINQG NQYITLIQEL AELPGKPPHL RLTGVDDPES  360
VQRPVGGLNT IGQRLEQLAE GLGVSFEFQA VASKTSIVSP PMLHCRQGEA LVINFAFQLH  420
HMPDESVSTV NQRDQLLRLA KSLSPKLVTV VEQDVNTNTT PFFPRFVEAY NYYSAVFDSL  480
EAAIPRESQD RMNVEKQCLA RDIVNIVACE GEERIERYEV AGKWRARMAM AGFTSTPMSK  540
SITDSIRDLI RMYCDRYKIK EEMGGLHFGW EDKSLIVASA WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein