PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0275551

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 448aa MW: 51417.2 Da PI: 6.7226

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0275551	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.5	6.4e-27	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 +Wt+++v++Li+a+++++e++++++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ ++++ RcHm_v2.0_Chr6g0275551 121 KWTDKMVRLLITAVSYIGEDIGSDCggggrrkfsalQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQV 207 7********************9888999999999********************************************55898 PP trihelix 76 sstcpyfdql 85 +++ ++d + RcHm_v2.0_Chr6g0275551 208 VENPTLLDVI 217 8888777655 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MEGHLSQGGR IPGGGSYVGL DLQGSVRAHH QTQHPHTLHQ QHHPISRQGS VVHPSIHEGF 60 PVKMGTMHNC DRTLSMVDYN KGEKCKNSAS DEDEPSYTEE GVDSHIEAQR GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED IGSDCGGGGR RKFSALQKKG KWKSVSKVMA ERGYHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PTLLDVIDYL TEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ HSLQEALRNR DDHDTDDLRR HHHDDLDEDD QDMETDERDD 300 FEENNASHGD NRGIFGGLGD SVKRLRQGQG REDFNFGGSL NAQDCNQSSY SHPQIAQGDL 360 NQVLPDSTKA AWLQKQWIES RSVQLEEQKL QIQVEMLELE KQRLKWQKFS KKRDRELEKL 420 KMENERMKLE NERMALELKR KEMGAGFS

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MEGHLSQGGR IPGGGSYVGL DLQGSVRAHH QTQHPHTLHQ QHHPISRQGS VVHPSIHEGF  60
PVKMGTMHNC DRTLSMVDYN KGEKCKNSAS DEDEPSYTEE GVDSHIEAQR GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED IGSDCGGGGR RKFSALQKKG KWKSVSKVMA ERGYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PTLLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ HSLQEALRNR DDHDTDDLRR HHHDDLDEDD QDMETDERDD  300
FEENNASHGD NRGIFGGLGD SVKRLRQGQG REDFNFGGSL NAQDCNQSSY SHPQIAQGDL  360
NQVLPDSTKA AWLQKQWIES RSVQLEEQKL QIQVEMLELE KQRLKWQKFS KKRDRELEKL  420
KMENERMKLE NERMALELKR KEMGAGFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	15	GGRIPGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-166	Trihelix family protein