PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0275541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 644aa MW: 71887.3 Da PI: 6.6922 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.8 | 1.6e-29 | 69 | 152 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e gf+rs+k+Ckek+en+ k+++++keg+ +++ + +t+++fdql+ RcHm_v2.0_Chr6g0275541 69 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHRRTKEGRTGKS--DGKTYRFFDQLQ 152 8********************************************************************964..5557******98 PP | |||||||
2 | trihelix | 100.8 | 1.1e-31 | 464 | 548 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+ Li++rr+++++++++ k+plWee+s m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+ RcHm_v2.0_Chr6g0275541 464 RWPKVEVHSLIKLRRSLDSKYQENGPKGPLWEEISGEMKKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHLLD 548 8*********************************************************************8.99*********987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence |
MLGDLGSSSD ATTATAMAAE PLGAHEGGGG DGGVGSNSGE EEKNNYSRSG GGGGGVGEEF 60 GDRSFGGNRW PRQETLALLK IRSDMDVAFR DASVKGPLWE EVSRKLAELG FHRSAKKCKE 120 KFENVYKYHR RTKEGRTGKS DGKTYRFFDQ LQALENQPQT PTTPNSTTTH QPRPQPTIAM 180 AVSNPPPIPT ISHINSTSTN STNTVPSAAP HQGIATPTIP SSLFPPTNPT IFPPPPQPPP 240 QQNPTSHHQH HQATTFVPPS SLPSISSTDL MSNSTSSSTS SDEEMEGRAK RKRKWKDFFE 300 TLMKEVVRKQ EDLQKRFLEA IEKREQERMA REEAWRLQEL ARINREREIL AQERSIAAAK 360 DTAVMSFLQK IAEQQPQHNP QATPTNPNNH LLTSQTPQPQ RPPAQQSVAL PPSQRQQTTP 420 PPTLQISQAP ITTFEITPRA NGENNNNNSN NNLVSPTTTP SSSRWPKVEV HSLIKLRRSL 480 DSKYQENGPK GPLWEEISGE MKKLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT 540 CPYFHLLDSL YRERNIGNNN DNNNNSPKPE NAAPLMVRPE QQWQPPNRVE PEMESERMDQ 600 NHEEEDRDGD EDEDEDEEED EGNYEIVANK GASVSVSVGA TTAQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 6e-88 | Trihelix family protein |