PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0275541
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 644aa    MW: 71887.3 Da    PI: 6.6922
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0275541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.6e-2969152186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e gf+rs+k+Ckek+en+ k+++++keg+ +++  + +t+++fdql+
  RcHm_v2.0_Chr6g0275541  69 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGFHRSAKKCKEKFENVYKYHRRTKEGRTGKS--DGKTYRFFDQLQ 152
                             8********************************************************************964..5557******98 PP

2trihelix100.81.1e-31464548186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW+k ev+ Li++rr+++++++++  k+plWee+s  m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+
  RcHm_v2.0_Chr6g0275541 464 RWPKVEVHSLIKLRRSLDSKYQENGPKGPLWEEISGEMKKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHLLD 548
                             8*********************************************************************8.99*********987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    
MLGDLGSSSD ATTATAMAAE PLGAHEGGGG DGGVGSNSGE EEKNNYSRSG GGGGGVGEEF  60
GDRSFGGNRW PRQETLALLK IRSDMDVAFR DASVKGPLWE EVSRKLAELG FHRSAKKCKE  120
KFENVYKYHR RTKEGRTGKS DGKTYRFFDQ LQALENQPQT PTTPNSTTTH QPRPQPTIAM  180
AVSNPPPIPT ISHINSTSTN STNTVPSAAP HQGIATPTIP SSLFPPTNPT IFPPPPQPPP  240
QQNPTSHHQH HQATTFVPPS SLPSISSTDL MSNSTSSSTS SDEEMEGRAK RKRKWKDFFE  300
TLMKEVVRKQ EDLQKRFLEA IEKREQERMA REEAWRLQEL ARINREREIL AQERSIAAAK  360
DTAVMSFLQK IAEQQPQHNP QATPTNPNNH LLTSQTPQPQ RPPAQQSVAL PPSQRQQTTP  420
PPTLQISQAP ITTFEITPRA NGENNNNNSN NNLVSPTTTP SSSRWPKVEV HSLIKLRRSL  480
DSKYQENGPK GPLWEEISGE MKKLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT  540
CPYFHLLDSL YRERNIGNNN DNNNNSPKPE NAAPLMVRPE QQWQPPNRVE PEMESERMDQ  600
NHEEEDRDGD EDEDEDEEED EGNYEIVANK GASVSVSVGA TTAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-88Trihelix family protein