PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0275491

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 582aa MW: 66299.8 Da PI: 7.6378

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0275491	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.1	4.9e-28	70	154	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+++r++m+ ++r+++lk+plWe++s+k+ e g+ rs+k+Ckek+en+ k+++++keg++++ ++ +t+++fd+lea RcHm_v2.0_Chr6g0275491 70 RWPRQETLSLLKIRSQMDAAFRDSSLKAPLWEDISRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--PEGKTYRFFDELEA 154 8******************************************************************95..55568****985 PP
2	trihelix	101.9	5.1e-32	417	502	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ ++ ++ k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+qlea RcHm_v2.0_Chr6g0275491 417 RWPKTEVQALINLRTSLDVKYHEAGPKGSLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFHQLEA 502 8******************************************************************97.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MLGSSGEAMM VTEPAVLLHE GSSTTTETAA ALLSNSGEED HHKHTSGDVD HEGGHDDDHR 60 SYGGGGGGNR WPRQETLSLL KIRSQMDAAF RDSSLKAPLW EDISRKLGEL GYYRSAKKCK 120 EKFENVYKYH RRTKEGRSGK PEGKTYRFFD ELEAFDRHQN SHHPSIIPPK PPVVLWTNNN 180 HHHPNQTVPP VVTVPQNGVT PATDPIIHSS TNNFSRPQQI QASQDNTNGF RLLNPTNLLS 240 SSTSSTTASD EEFQQRNKRK RKWKYFFRRL TKQVLEKQEK LQETFLEAIT KCDQERMVKE 300 EALRMQEMAR IDREHEILVQ ERSTAAAKDT ALIQFLQKVS LQHNSNDNRS LEITDAAILV 360 VPPTNVPRPL PALPVSWATD QRGLTTSSDL APRTLEAKKV YSNGESNSVL AAVGSSRWPK 420 TEVQALINLR TSLDVKYHEA GPKGSLWEEI SAGMRRLGYN RSSKRCKEKW ENINKYFKKV 480 KESSKTRPED SKTCPYFHQL EALYKKKNKK IEYHKSCIDD RSVEKLQIMQ PLRENVDPNQ 540 EEDEHDHGED GESTEEDQEH DHDHGQVYRD SNKLQTVING HG

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MLGSSGEAMM VTEPAVLLHE GSSTTTETAA ALLSNSGEED HHKHTSGDVD HEGGHDDDHR  60
SYGGGGGGNR WPRQETLSLL KIRSQMDAAF RDSSLKAPLW EDISRKLGEL GYYRSAKKCK  120
EKFENVYKYH RRTKEGRSGK PEGKTYRFFD ELEAFDRHQN SHHPSIIPPK PPVVLWTNNN  180
HHHPNQTVPP VVTVPQNGVT PATDPIIHSS TNNFSRPQQI QASQDNTNGF RLLNPTNLLS  240
SSTSSTTASD EEFQQRNKRK RKWKYFFRRL TKQVLEKQEK LQETFLEAIT KCDQERMVKE  300
EALRMQEMAR IDREHEILVQ ERSTAAAKDT ALIQFLQKVS LQHNSNDNRS LEITDAAILV  360
VPPTNVPRPL PALPVSWATD QRGLTTSSDL APRTLEAKKV YSNGESNSVL AAVGSSRWPK  420
TEVQALINLR TSLDVKYHEA GPKGSLWEEI SAGMRRLGYN RSSKRCKEKW ENINKYFKKV  480
KESSKTRPED SKTCPYFHQL EALYKKKNKK IEYHKSCIDD RSVEKLQIMQ PLRENVDPNQ  540
EEDEHDHGED GESTEEDQEH DHDHGQVYRD SNKLQTVING HG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-71	Trihelix family protein