PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0268351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BBR-BPC
Protein Properties Length: 310aa    MW: 35094.6 Da    PI: 9.9325
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0268351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind364.52e-11113101301
               GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalae 69 
                             mdd  ++e  r+k  yy+              ++ ++l   +++++ms+iaerd++irern+a+sek++a+a+rd+a+ qrd+a+a+
  RcHm_v2.0_Chr6g0268351   1 MDDGRQHEngRHKQdYYRgapspwnmtaqqqvKEpNALV--MNKKIMSIIAERDSAIRERNAAISEKNEAFAARDEALRQRDEAFAQ 85 
                             77766655689999899999*999999887663335666..99******************************************** PP

               GAGA_bind  70 rnkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqra 156
                             r+ al+erdn+++a   ++ns+++ l    +v +g+k ++   + +  +++d+++ +++  ++ea+pi+    ea +++++k+++++
  RcHm_v2.0_Chr6g0268351  86 RDTALMERDNAFAAFHIRDNSMNFPL---GGVQRGSKRMHYPSN-HPVNMADDPYSTKDVPITEAFPISVLSAEAIKSRQTKRSKEN 168
                             *******************9976655...577888999986665.779**********************************99999 PP

               GAGA_bind 157 kkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                             k  k++ka++kk  +e+ +++ ++++   + ++e++++dl+ln vs+De+t+PvPvCsCtG++rqCYkWGnGGWqS+CCtt++S+yP
  RcHm_v2.0_Chr6g0268351 169 KASKASKASRKKV-GEDLNRQASTDGI--KYRSEWDTQDLGLNLVSFDETTMPVPVCSCTGMPRQCYKWGNGGWQSSCCTTNMSMYP 252
                             9999999988777.7788788888885..69******************************************************** PP

               GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                             LP+++++r+aR++grKmS+++f++lL++LaaeG+dls p+DLk++WA+HGtn+++ti+
  RcHm_v2.0_Chr6g0268351 253 LPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSVPLDLKEYWARHGTNRYITIK 310
                             *********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MDDGRQHENG RHKQDYYRGA PSPWNMTAQQ QVKEPNALVM NKKIMSIIAE RDSAIRERNA  60
AISEKNEAFA ARDEALRQRD EAFAQRDTAL MERDNAFAAF HIRDNSMNFP LGGVQRGSKR  120
MHYPSNHPVN MADDPYSTKD VPITEAFPIS VLSAEAIKSR QTKRSKENKA SKASKASRKK  180
VGEDLNRQAS TDGIKYRSEW DTQDLGLNLV SFDETTMPVP VCSCTGMPRQ CYKWGNGGWQ  240
SSCCTTNMSM YPLPQMPNKR HARMGGRKMS GSVFTRLLSR LAAEGHDLSV PLDLKEYWAR  300
HGTNRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-132BBR-BPC family protein