PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0267521

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 1749aa MW: 190919 Da PI: 4.3288

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0267521	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.4e-06	1724	1747	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k + Cr ++++G+Ck G++C + H+ RcHm_v2.0_Chr6g0267521 1724 KGRVCR-YFESGHCKKGSSCDYLHP 1747 7789.8888***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1749 aa Download sequence
MAAEAEREEV EAVEVVEAER EEVGGVAEEV QVDREEEEEV KLEGEGVELE KAEVELEREE 60 IREEEEKAEE QGRVTDMVDE TIETEGRAEA EAVEGGHVSD LNLKDTVDQT LETSDGADVE 120 DTLETTDAVE EGKGNEAEVH EVNATDMGDE TNGTEAVEEG KEGVVTDMVD ETIESEAMEE 180 EGNGCAAEGH EANVTVTESD EIIETTEAVE EGKLSEAEGD EANVKDMVHE SIETEAAGEE 240 GQKAEVEGQE ADAAIEAEEA VEVGQEAEAE GDEKNLNVKD MVDGAVETQV SREEEQEAEV 300 EEHEANTTIE DEEVGQEAAA EGGERNLNVK DMVDDTIETQ VSGEVGQEAE AEGGEQNLNV 360 KDMVDDTIQT QVSGEEEQEA EVEGHELTAT ATNMVDEADE AVVTTEAVEA DVSDDVMEET 420 TEAEETEAAE GAEEMEADEM EAAEEEEAEE MEMVEDTNTS GVGGKRKRRK NSKAAASEKV 480 LSKKKEEDVC FICFDGVSSC FVTGGQGCPK AYHPSCVNRD EAFFRAKGRW NCGWHLCSNC 540 EKNAHYMCYT CTFSLCKACT KDAVILCIKG NKGFCETCMK TVMLIEKNEH GNKEKDAVDF 600 DDKSSWEYLF KDYWTDLKER LSLTLDDLSQ AKNPWKGSAG HANKHGSHDE PYDANIDGGS 660 DSDNSENLDS TNSKRRKGKK RLKTRAKGKN SSSPATGSGG RYADDNTEWA SKELLEFVMH 720 MRNGDSSALS QFDVQALLLE YIKRNKLRDP RRKSQIICDL RLQSLFGKPR VGHFEMLKLL 780 ESHFFMKEDS QVDDHQGSVV DTEGNQLEAD GHSDTPAKAS KDKKRKRKKN EPQSNVEDFA 840 AIDIHNINLI YLRRNLVEDL LEDTDNFQEK VAGSFVRIRI SGSGQKQDLY RLVQVIGTCK 900 AAEPYKVGKR MTDILLEILN LNKTEIVTID IISNQEFTED ECKRLRQSIK CGLINRLTVG 960 DVQEKAVVLQ PVRVKDWLET ETVRLQHLRD RASEKGRRKE YPFLFQFNIY SCEFVHLFLL 1020 LEGSAAYFLL LFLLYLLSDK MRDSCELLKT PEERQRRLEE TLEIHADPNM DPSYESEEDE 1080 DEGGDKREES YTRPTGSGFG RKGREPISPR RGGSSLNDSW SGTRNFSNMN RDFGRSMSGK 1140 GIFNKAENTT GAGEIVNDAW GQGRETPQTN YWENKQNISS LETGSRSTQS VVPSEASPAR 1200 APENRAAPIS TGVAQSVANI NETEKIWHYQ DPSGKVQGPF SMIQLRKWNN TGYFPPNLRV 1260 WKNTDKQEDS ILVTDALVGK FQKDPSIAKA QMVHDSHLTP ASSGKAQGAQ LQQSLESQSG 1320 GGSWGAHNEI ISSTGRGTPS SVEVPKYTSD GWGTTNFPSP TPSQTPISGA KRQAYENNWP 1380 PSPGGNGVMQ SHAVLTPETA MRVSGNDPST SLTGMTAAPN ALQMHGQVTV SGPVLANASV 1440 KPLPDVQNIV SNLQNLVQSV TNRTTANDTR AWGSGTVPGS ESQPWGGAPS QKIEPNNATN 1500 VPAQHPSHGY WPPTNNGTSS INTGNSAGNF PAQGFSGVPN SDAWRPPVPS NQSYIQPPAQ 1560 PQVPWGSSVS DNQSTVPRMG QESQNSGWVP VAGNPNVAWG GPVPGNSNMN WAAPSQSPGW 1620 SASGQVPVRG NAVPSWAPPP GQGPPSVSAN PGWAPPGQGP ALGNAISGWS APTANQTQNG 1680 DRFSNQRDRG SHGGDSGFGG GKPWNRQPSF GSGGGGGSSR PPFKGRVCRY FESGHCKKGS 1740 SCDYLHPDH

Sequence ? help Back to Top

Protein Sequence Length: 1749 aa Download sequence

MAAEAEREEV EAVEVVEAER EEVGGVAEEV QVDREEEEEV KLEGEGVELE KAEVELEREE  60
IREEEEKAEE QGRVTDMVDE TIETEGRAEA EAVEGGHVSD LNLKDTVDQT LETSDGADVE  120
DTLETTDAVE EGKGNEAEVH EVNATDMGDE TNGTEAVEEG KEGVVTDMVD ETIESEAMEE  180
EGNGCAAEGH EANVTVTESD EIIETTEAVE EGKLSEAEGD EANVKDMVHE SIETEAAGEE  240
GQKAEVEGQE ADAAIEAEEA VEVGQEAEAE GDEKNLNVKD MVDGAVETQV SREEEQEAEV  300
EEHEANTTIE DEEVGQEAAA EGGERNLNVK DMVDDTIETQ VSGEVGQEAE AEGGEQNLNV  360
KDMVDDTIQT QVSGEEEQEA EVEGHELTAT ATNMVDEADE AVVTTEAVEA DVSDDVMEET  420
TEAEETEAAE GAEEMEADEM EAAEEEEAEE MEMVEDTNTS GVGGKRKRRK NSKAAASEKV  480
LSKKKEEDVC FICFDGVSSC FVTGGQGCPK AYHPSCVNRD EAFFRAKGRW NCGWHLCSNC  540
EKNAHYMCYT CTFSLCKACT KDAVILCIKG NKGFCETCMK TVMLIEKNEH GNKEKDAVDF  600
DDKSSWEYLF KDYWTDLKER LSLTLDDLSQ AKNPWKGSAG HANKHGSHDE PYDANIDGGS  660
DSDNSENLDS TNSKRRKGKK RLKTRAKGKN SSSPATGSGG RYADDNTEWA SKELLEFVMH  720
MRNGDSSALS QFDVQALLLE YIKRNKLRDP RRKSQIICDL RLQSLFGKPR VGHFEMLKLL  780
ESHFFMKEDS QVDDHQGSVV DTEGNQLEAD GHSDTPAKAS KDKKRKRKKN EPQSNVEDFA  840
AIDIHNINLI YLRRNLVEDL LEDTDNFQEK VAGSFVRIRI SGSGQKQDLY RLVQVIGTCK  900
AAEPYKVGKR MTDILLEILN LNKTEIVTID IISNQEFTED ECKRLRQSIK CGLINRLTVG  960
DVQEKAVVLQ PVRVKDWLET ETVRLQHLRD RASEKGRRKE YPFLFQFNIY SCEFVHLFLL  1020
LEGSAAYFLL LFLLYLLSDK MRDSCELLKT PEERQRRLEE TLEIHADPNM DPSYESEEDE  1080
DEGGDKREES YTRPTGSGFG RKGREPISPR RGGSSLNDSW SGTRNFSNMN RDFGRSMSGK  1140
GIFNKAENTT GAGEIVNDAW GQGRETPQTN YWENKQNISS LETGSRSTQS VVPSEASPAR  1200
APENRAAPIS TGVAQSVANI NETEKIWHYQ DPSGKVQGPF SMIQLRKWNN TGYFPPNLRV  1260
WKNTDKQEDS ILVTDALVGK FQKDPSIAKA QMVHDSHLTP ASSGKAQGAQ LQQSLESQSG  1320
GGSWGAHNEI ISSTGRGTPS SVEVPKYTSD GWGTTNFPSP TPSQTPISGA KRQAYENNWP  1380
PSPGGNGVMQ SHAVLTPETA MRVSGNDPST SLTGMTAAPN ALQMHGQVTV SGPVLANASV  1440
KPLPDVQNIV SNLQNLVQSV TNRTTANDTR AWGSGTVPGS ESQPWGGAPS QKIEPNNATN  1500
VPAQHPSHGY WPPTNNGTSS INTGNSAGNF PAQGFSGVPN SDAWRPPVPS NQSYIQPPAQ  1560
PQVPWGSSVS DNQSTVPRMG QESQNSGWVP VAGNPNVAWG GPVPGNSNMN WAAPSQSPGW  1620
SASGQVPVRG NAVPSWAPPP GQGPPSVSAN PGWAPPGQGP ALGNAISGWS APTANQTQNG  1680
DRFSNQRDRG SHGGDSGFGG GKPWNRQPSF GSGGGGGSSR PPFKGRVCRY FESGHCKKGS  1740
SCDYLHPDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	465	470	KRKRRK
2	823	828	KKRKRK
3	823	829	KKRKRKK
4	823	830	KKRKRKKN
5	825	829	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein