PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr6g0266821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 101aa MW: 11686 Da PI: 6.5224 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.5 | 4e-17 | 4 | 96 | 2 | 88 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikev.diykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyW 83 p GfrFhP deelv ++L+++++ + ++ +e +++ + y ePw k + + + ++fF+kr+k +++gkr r++ sg+W RcHm_v2.0_Chr6g0266821 4 PIGFRFHPIDEELVGYFLQQRARMGNqFHSNE-VSDYsEFYGQeEPWVVWdKnggSSVDDGEPLFFFTKRKKLNPNGKRFDRKVGSGTW 91 89*******************98776355544.555547775549****633343222245577************************* PP NAM 84 katgk 88 + + + RcHm_v2.0_Chr6g0266821 92 SGQFS 96 97655 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 101 aa Download sequence |
MGCPIGFRFH PIDEELVGYF LQQRARMGNQ FHSNEVSDYS EFYGQEEPWV VWDKNGGSSV 60 DDGEPLFFFT KRKKLNPNGK RFDRKVGSGT WSGQFSREVV V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54330.1 | 4e-11 | NAC family protein |