PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259941
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 418aa    MW: 47494.6 Da    PI: 9.5608
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.56.1e-19695297
                            EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                            f +l+ s++lk ++l +p +fa++h  +   s+ +tl  + g +W+v l  +k +++y++++GW++F +   +++g f++F+++g+s+f
  RcHm_v2.0_Chr6g0259941  6 FEKLILSSTLKAKQLKIPENFAKKHRDE--FSTYVTLSVPGGHVWRVGL--KKADNKYWFQDGWQDFIERYSIRTGYFLIFRYEGNSSF 90
                            56677899999999***********855..8899***************..************************************** PP

                            ..EEEEE CS
                      B3 91 elvvkvf 97
                              +v+++
  RcHm_v2.0_Chr6g0259941 91 --TVHIY 95
                            ..66664 PP
2B361.31.6e-19299390499
                             E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                             vl ps+  + ++++lp  fae++ +g++     ++l++ +g++W v++ yr+++    l++GW eF  +n+L egD++vF+l +++e
  RcHm_v2.0_Chr6g0259941 299 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQSADGKQWPVRCLYRGGR--AKLSQGWYEFTVENNLLEGDVCVFELLKTKE 380
                             78899******************866743...5***************665555..66************************99999 PP

                             E..EEEEE-S CS
                      B3  90 felvvkvfrk 99 
                               l+v vfr 
  RcHm_v2.0_Chr6g0259941 381 IVLKVNVFRV 390
                             9999999985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MKRPYFEKLI LSSTLKAKQL KIPENFAKKH RDEFSTYVTL SVPGGHVWRV GLKKADNKYW  60
FQDGWQDFIE RYSIRTGYFL IFRYEGNSSF TVHIYNLTTA EINYPPNTLS GGGGTVYGNH  120
YQVFEEIEDE DSVEILGSSP SSIVTSSMRD RLFGDSANQL TPGKNYSPPS LQNLFNGAKH  180
NWTDAGKLHT PKVAALQEGN NSTQDNGTQH KKSKKTLDEI KSCTPGEGTE SVKKTVRKRR  240
KRDPNAQESS AQHEQDVEIR FRFYESASAR KRTVTAEERE RAVNTAKTFE PVNPFCRVVL  300
RPSYLYRGCI MYLPSCFAEK NLSGVSGFIK LQSADGKQWP VRCLYRGGRA KLSQGWYEFT  360
VENNLLEGDV CVFELLKTKE IVLKVNVFRV QEDAGFVTQS FVNQPSGQNI IQAIPLRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-136B3 family protein