PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0259331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 29671.1 Da PI: 9.7338 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.6e-16 | 10 | 102 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ffk+ + ++++ l++p kf +++ +++ e+ tl l+ +s sW+v++ ++ + +++++GW++F k+n L + +f+vF ++ RcHm_v2.0_Chr6g0259331 10 FFKII--KTGFNTDDLRIPPKFRRHMlnELS--ETATLELKGSSKCSWTVQV--SQIESDIYFKNGWQKFIKDNSLGDFEFLVFWYE 90 67777..77889999*******866665444..667999*************..888889**************************9 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + + f ++ +f+k RcHm_v2.0_Chr6g0259331 91 RPMHF--TIEIFDK 102 88999..9999987 PP | |||||||
2 | B3 | 47.7 | 2.9e-15 | 178 | 255 | 14 | 97 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ +p +f +eh +++ ++l++++g++W+vk+ +++++ l++GW eF +an+++ gD+++F l+g ++++vv+v+ RcHm_v2.0_Chr6g0259331 178 YNVAVPVDFSREHL--PQGYYNIVLKNLKGQKWKVKV--VCSGKTVKLSAGWVEFRRANQINCGDICTFDLVG--RRTMVVHVI 255 45789********4..235678***************..77777799***********************998..455688886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MEGASKEPTF FKIIKTGFNT DDLRIPPKFR RHMLNELSET ATLELKGSSK CSWTVQVSQI 60 ESDIYFKNGW QKFIKDNSLG DFEFLVFWYE RPMHFTIEIF DKTACKRNNL LEKSTRADNT 120 KRPRGRPRKC NRSAAGENIQ SCQSFELKEI KEEEEEEAAT LPSSGFRSFT SIMGKRCYNV 180 AVPVDFSREH LPQGYYNIVL KNLKGQKWKV KVVCSGKTVK LSAGWVEFRR ANQINCGDIC 240 TFDLVGRRTM VVHVIPK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | KRPRGRPRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 2e-16 | B3 family protein |