PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0259241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 29888.6 Da PI: 10.2495 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65 | 1.2e-20 | 14 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkv +p +++ rl++p +f+++ g++ ++ tl+l+ +s sW+vk+ +k+++ +++++GW+eF + n ++egDf+vF+++g+ RcHm_v2.0_Chr6g0259241 14 FFKVILPRYST--ERLMIPPQFLKHLGKDLCSKATLSLNMSSQCSWNVKV--TKTKKDVYFKDGWQEFLNNNSVDEGDFLVFTYEGK 96 88888665555..569*******777777778889***************..*********************************99 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 + f + vf++ RcHm_v2.0_Chr6g0259241 97 MHF--SIAVFDR 106 999..8888887 PP | |||||||
2 | B3 | 38.5 | 2.1e-12 | 167 | 243 | 14 | 94 |
T-EE--HHH.HTT..---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 14 grlvlpkkfaeeh..ggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + ++p +f +eh g + + + + g++W +vkl + ++ +++kGW F+++n++k+g +++F+l+++ ++vv RcHm_v2.0_Chr6g0259241 167 CVYSIPTTFYREHlaAG----KYEFAFLKiSGGNKWyKVKL--VPSIRTAFMSKGWAAFARDNQIKVGHVCIFELVKE--NKMVV 243 6779*********6533....34566666155677758999..999999*************************9874..33454 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MVRKNGVKEK RPSFFKVILP RYSTERLMIP PQFLKHLGKD LCSKATLSLN MSSQCSWNVK 60 VTKTKKDVYF KDGWQEFLNN NSVDEGDFLV FTYEGKMHFS IAVFDRSCCG RVDFPNETFK 120 ESIVAMTTKR PCGRPRKDNS DNTAKESAIS FKSKFPHYKS TIKKTYCVYS IPTTFYREHL 180 AAGKYEFAFL KISGGNKWYK VKLVPSIRTA FMSKGWAAFA RDNQIKVGHV CIFELVKENK 240 MVVHNLTFSG NDQVQAINSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 4e-20 | B3 family protein |