PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0258211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 340aa    MW: 39080.8 Da    PI: 5.5345
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0258211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.9e-17160245195
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f k +++s+ +   +l+lp++f++ h     +++ t+tled++g+++e k+  +k+     l++GWk+F++a++L+  D++vF+l++
  RcHm_v2.0_Chr6g0258211 160 FMKSMIRSNISVCFMLTLPRRFCNLHlP--LHGTATITLEDKEGKEYETKFLADKRT----LSGGWKGFCQAKDLRLDDVLVFQLVS 240
                             78999999999999*********88853..447789***************555554....9**********************987 PP

                             SSEE..EEE CS
                      B3  87 rsefelvvk 95 
                                   ++k
  RcHm_v2.0_Chr6g0258211 241 PL----KFK 245
                             33....333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MNDREEEMSE DFREEKQEEE KDRMDISPLS VTRQQFDNLT LHSTFSVQQR KRSKIRTSRF  60
SPTQIVKFQN LTLDSPNSEQ RQPLAEANKY GFKTPKGKRH LSPDLNTKRE VSSDPQRHGG  120
CKRSRTNPSM SWHFGHPEES PVKSQVREIP ENLEAECPFF MKSMIRSNIS VCFMLTLPRR  180
FCNLHLPLHG TATITLEDKE GKEYETKFLA DKRTLSGGWK GFCQAKDLRL DDVLVFQLVS  240
PLKFKVYRLR PEYDPSEDDV DAAFVLLKMS TSEQTLSGKP SNAEENPANL TSSSFVDDDE  300
SEDQITEIRN LAPIMVVDLI RPGQAADFED VRSYENFAST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-26B3 family protein