PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0258201
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 286aa    MW: 33134.6 Da    PI: 6.2342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0258201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.8e-14115196188
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                             f+k +++ +v     ++lpk+f+  +        ++t+tlede+g++++  +   + ++r  l++GW++F+ a++L  gD +vF+l+
  RcHm_v2.0_Chr6g0258201 115 FLKSMIHCNVVHGFSVTLPKQFCYLYlpF----HDTTITLEDERGEEYRTIF--LGDKRR--LSGGWRGFCVAKKLVLGDLLVFHLV 193
                             889999999**************666432....5679***************..666666..9**********************98 PP

                             SSS CS
                      B3  86 grs 88 
                             +  
  RcHm_v2.0_Chr6g0258201 194 SPL 196
                             743 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MNLEENFFQY FQEDEGHTTF PELPVPTTST PFDDFTLHPV EQRRETLEET TQNGFRPWKW  60
KSPLSPIPKR KNAGDPLRNG GYKRKITKSN YHEKSSVRNQ LQHILANLGP ECPFFLKSMI  120
HCNVVHGFSV TLPKQFCYLY LPFHDTTITL EDERGEEYRT IFLGDKRRLS GGWRGFCVAK  180
KLVLGDLLVF HLVSPLKFKV YKVEPDSLTE VDAAFILLKL SLSTLFEEYH RMPPPKDACQ  240
DNIQTTSLTI DAILERVDED HSEDYNDHRF GSNLLFHPGL VTLEDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.19e-28B3 family protein