PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0258121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 358aa MW: 40427.7 Da PI: 7.0223

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0258121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68	1.3e-21	31	119	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k++ ps+v + +l lpk+f+ +h + + t++l+desg++++ k+ ++++ +l++GW++F+ an+L +gD++vF+l++ RcHm_v2.0_Chr6g0258121 31 FVKAMQPSNVASGFLLALPKQFCHSHL--PSHDATIILQDESGEKYRTKF--IVQKDKSILSSGWRRFCFANKLVVGDVLVFHLVRP 113 89*******************9994..335679***********..55555678*********************9985 PP SEE..EEE CS B3 88 sefelvvk 95 +f +v RcHm_v2.0_Chr6g0258121 114 LKF--KVY 119 555..444 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MFENVDNPED SSVKSQVEEI KAKIGVECPI FVKAMQPSNV ASGFLLALPK QFCHSHLPSH 60 DATIILQDES GEKYRTKFIV QKDKSILSSG WRRFCFANKL VVGDVLVFHL VRPLKFKVYI 120 MGTHSLAEVE EAFSLLKFGS CTKQTAFEEI RPMPLPKDVC QVHIGEKTSL TLDSNAALID 180 EEYNEEFGFN ILEDVGLSIP ATDFGDVENT KDFTILVNGV SINSCLSEEI RNRYYDLCCS 240 QRSFLHNHLL KSINGKLAAE IITETINIAN AIRACRLSTP HGAYVLWEKT LDAFEILGMN 300 VGFLHARLKQ LLSLSFRTKQ ALIRKSKEAK LEQARAKDKV ITLESKYWKL MEREDGKC

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MFENVDNPED SSVKSQVEEI KAKIGVECPI FVKAMQPSNV ASGFLLALPK QFCHSHLPSH  60
DATIILQDES GEKYRTKFIV QKDKSILSSG WRRFCFANKL VVGDVLVFHL VRPLKFKVYI  120
MGTHSLAEVE EAFSLLKFGS CTKQTAFEEI RPMPLPKDVC QVHIGEKTSL TLDSNAALID  180
EEYNEEFGFN ILEDVGLSIP ATDFGDVENT KDFTILVNGV SINSCLSEEI RNRYYDLCCS  240
QRSFLHNHLL KSINGKLAAE IITETINIAN AIRACRLSTP HGAYVLWEKT LDAFEILGMN  300
VGFLHARLKQ LLSLSFRTKQ ALIRKSKEAK LEQARAKDKV ITLESKYWKL MEREDGKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-26	B3 family protein