PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0258081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 317aa    MW: 35970 Da    PI: 6.9873
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0258081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31.1e-21157246196
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+k++ ps+v +  +l lpk+f+ +h   +  + t++l+desg++++ k+    ++++ +l++GW++F+ an+L +gD++vF+l++ 
  RcHm_v2.0_Chr6g0258081 157 FVKAMQPSNVASGFLLALPKQFCHSHL--PSHDATIILQDESGEKYRTKF--IVQKDKSILSSGWRRFCFANKLVVGDVLVFHLVRP 239
                             89*********************9994..335679***************..55555678***********************9985 PP

                             SEE..EEEE CS
                      B3  88 sefelvvkv 96 
                              +f  +v +
  RcHm_v2.0_Chr6g0258081 240 LKF--KVYI 246
                             555..4444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MVKVMLPSHV SGGFWLTSAC SEKEKPVLNM NVEDQCFEHF SDQDEEDDDF TISQISSLRR  60
PQFHPSFSPS VSLVFVHEWQ VEQRKLLETQ KKGFKTRTSP FSPTHDTHRK VSGDHQKPQG  120
CKRKRTMFAN VDNPEDSSVK SQVEEIKAKI GVEAPIFVKA MQPSNVASGF LLALPKQFCH  180
SHLPSHDATI ILQDESGEKY RTKFIVQKDK SILSSGWRRF CFANKLVVGD VLVFHLVRPL  240
KFKVYIMGTH SLAEVEAAFS LLKFGSCTKQ TAFEEIRPMP LPKDVCQVHI DEKTSLTLDS  300
NAALIDEEYN EEFGSTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122149KRKRTMFANVDNPEDSSVKSQVEEIKAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-28B3 family protein