PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0257881
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 364aa    MW: 40179.9 Da    PI: 6.6842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0257881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12130176555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h   Er RR+++++ f++L  llP++   p  K +K++i+ +Av YIk L+
  RcHm_v2.0_Chr6g0257881 130 HIYTERERRKKMRNMFANLHALLPQL---P-SKADKSTIVDEAVSYIKRLE 176
                             7778*********************6...3.8****************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MSGREAGAGG SDGVLWENQS WVNLSNSTDN FLLNSNSENS AGGGDEREDK SGEKEKEMME  60
REDRVQPEVE PVAAPGKKTL VKKRVGRGGA SGVKKHNGKA TKGKGIGSSD EVVEEGKGGD  120
GDSEDDHELH IYTERERRKK MRNMFANLHA LLPQLPSKAD KSTIVDEAVS YIKRLEITLQ  180
SLQQQKRERM RSLPSNSMVN HNHSSVRMNS QNVAYDSKEA FLASHASSSN LAAASTTTAN  240
GFNINPDFNP LNHSLSTNSL STEPIVFETW TSSNVVLNMC RDEAQISVCS PKKPGVFTQI  300
CFILEKYKIV VVTAHIISDS HRSMYMIQAQ PSRAPDNQFL EMFPAVEIFK QAVSEINVWI  360
VSTY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-25bHLH family protein