PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0254411

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-PHD

Protein Properties

Length: 1207aa MW: 131916 Da PI: 4.4771

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0254411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40	6.5e-13	1053	1096	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e+LA++lg+ +qV+ WF N R RcHm_v2.0_Chr6g0254411 1053 EAVTQQLYASFKENQYPDRSMKERLAQELGVMAKQVSKWFENAR 1096 56789*************************************99 PP
2	PHD	39.4	1.4e-13	677	732	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l see+p + wlC+ C++k RcHm_v2.0_Chr6g0254411 677 FCAKCGSkdVYADNDIILCDGaCDRGFHQYCLEPPLLSEEIPPDdeGWLCPGCDCK 732 6999964445****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1207 aa Download sequence
MADAAPLDIP LECVSSQTAK CQEESTSGQT HDIGSESGFS EPTKQKIGCD VLQNELQEIC 60 NASNDDDQSQ SFGNLTEKSH PEQLGLPPEA VSNISQGAAV NILTKSAHGH PSTCENIQNG 120 PLQIRTALSS CTTSDHLQSF SGNVTKNSLA EKLELPCEEP HEDLGCQTGK TSCSEQISLE 180 QRNDFGFGTR EEKQHIGSDI VQNEIIQTII PVSSCGNEQL QFISETVNTT FPNEQVGVPP 240 EDVSKTLEPT NNFGFETQSS ELAEDKQHCG SDVPQNEGLQ SCDGNEPLQS FCENMNTSSL 300 NEQAVLPCEG VKKTLEQTNN VNSGTSYSEP AEENQNLGSD FVQDEPLQTI IPVASCGGNE 360 QLQVVNEVAS VTSLSEQVGL PLEAVSKTCQ TEKLSCYLQT ASDQINESGS GSVPCEPQEQ 420 RDQLGLLPSQ NDQVKTCTAV SSSIVSEQSG PSVEEMKNSV IGHLEPPLED ASKDHTDELI 480 KPHMNNVPQN SSLDPSETAS ENASKISSQI GCKDKRNSSS RQKSRSLVSS DRVLRSRTVE 540 KPEAPELSNN VATLESSNSV ANVSNEKEGK RQKRKKKHRE RVAADEFSRI RSHLRYFLNR 600 INYEKSLIDA YSGEGWKGNS LEKIRPEKEL QRATSEILRR KLKIRDLFQR LDSLCAEGMF 660 PESLFDSDGQ IDSEDIFCAK CGSKDVYADN DIILCDGACD RGFHQYCLEP PLLSEEIPPD 720 DEGWLCPGCD CKVDCIDLLN DSQGTDLSIT DSWEKVFPEA AVAASAGQHQ ENNQGLLSDD 780 SDDNDYDPDG PETDEEVQEA ESSSDESEYA SASDGLETPK TNDEQYLGLP SDDSEDDDFN 840 PDAPDPTEDV KQDSSSSDFT SDSEDLEAVL DEDNKSFENG EGPQSSLLEG SMLLRGSGEK 900 SSKRGQKRHS IKDEISSLLE SDPGQDGSTP VSGKRHVERL DYKKLHDEEY GNIPTSDDED 960 YNETAAPRKR KKGTGQVSPA SLKGKPSTIK NGVTSKDIKD DPDKNEHTPR RTPRRKSSAK 1020 DNSSSPNESL KSSPKSGSTS GRARASKYKR LGEAVTQQLY ASFKENQYPD RSMKERLAQE 1080 LGVMAKQVSK WFENARHCVK AGLAVPQAMR KQPNQAETNI RDADHDGTQK NESPRTDDAV 1140 AGCCSQDVKD NKSATPKSSR AKTSTPKGRK RKSRLDPGGS DLDEKFKTPP ETSSKGGRVT 1200 RRRKSVA

Sequence ? help Back to Top

Protein Sequence Length: 1207 aa Download sequence

MADAAPLDIP LECVSSQTAK CQEESTSGQT HDIGSESGFS EPTKQKIGCD VLQNELQEIC  60
NASNDDDQSQ SFGNLTEKSH PEQLGLPPEA VSNISQGAAV NILTKSAHGH PSTCENIQNG  120
PLQIRTALSS CTTSDHLQSF SGNVTKNSLA EKLELPCEEP HEDLGCQTGK TSCSEQISLE  180
QRNDFGFGTR EEKQHIGSDI VQNEIIQTII PVSSCGNEQL QFISETVNTT FPNEQVGVPP  240
EDVSKTLEPT NNFGFETQSS ELAEDKQHCG SDVPQNEGLQ SCDGNEPLQS FCENMNTSSL  300
NEQAVLPCEG VKKTLEQTNN VNSGTSYSEP AEENQNLGSD FVQDEPLQTI IPVASCGGNE  360
QLQVVNEVAS VTSLSEQVGL PLEAVSKTCQ TEKLSCYLQT ASDQINESGS GSVPCEPQEQ  420
RDQLGLLPSQ NDQVKTCTAV SSSIVSEQSG PSVEEMKNSV IGHLEPPLED ASKDHTDELI  480
KPHMNNVPQN SSLDPSETAS ENASKISSQI GCKDKRNSSS RQKSRSLVSS DRVLRSRTVE  540
KPEAPELSNN VATLESSNSV ANVSNEKEGK RQKRKKKHRE RVAADEFSRI RSHLRYFLNR  600
INYEKSLIDA YSGEGWKGNS LEKIRPEKEL QRATSEILRR KLKIRDLFQR LDSLCAEGMF  660
PESLFDSDGQ IDSEDIFCAK CGSKDVYADN DIILCDGACD RGFHQYCLEP PLLSEEIPPD  720
DEGWLCPGCD CKVDCIDLLN DSQGTDLSIT DSWEKVFPEA AVAASAGQHQ ENNQGLLSDD  780
SDDNDYDPDG PETDEEVQEA ESSSDESEYA SASDGLETPK TNDEQYLGLP SDDSEDDDFN  840
PDAPDPTEDV KQDSSSSDFT SDSEDLEAVL DEDNKSFENG EGPQSSLLEG SMLLRGSGEK  900
SSKRGQKRHS IKDEISSLLE SDPGQDGSTP VSGKRHVERL DYKKLHDEEY GNIPTSDDED  960
YNETAAPRKR KKGTGQVSPA SLKGKPSTIK NGVTSKDIKD DPDKNEHTPR RTPRRKSSAK  1020
DNSSSPNESL KSSPKSGSTS GRARASKYKR LGEAVTQQLY ASFKENQYPD RSMKERLAQE  1080
LGVMAKQVSK WFENARHCVK AGLAVPQAMR KQPNQAETNI RDADHDGTQK NESPRTDDAV  1140
AGCCSQDVKD NKSATPKSSR AKTSTPKGRK RKSRLDPGGS DLDEKFKTPP ETSSKGGRVT  1200
RRRKSVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	968	972	RKRKK
2	1168	1175	GRKRKSRL
3	1200	1205	TRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-89	HB-PHD family protein