PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0253401

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 507aa MW: 56764.3 Da PI: 8.1706

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0253401	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4e-19	4	60	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r Rt++t+ q e+Le+++ +r+ps++++e L+k+l+L +qV+vWF NrRak+++ RcHm_v2.0_Chr6g0253401 4 KRLRTKWTPIQRETLEKAYSVERTPSEATKEGLSKQLELGYEQVTVWFMNRRAKDRR 60 789****************************************************97 PP
2	Homeobox	41.3	2.6e-13	66	116	3	53
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 k+ ++t++q+ +Le+ ++ +++ps ++reeL kk+gLte qV+ W+ +R RcHm_v2.0_Chr6g0253401 66 KKSRMTRHQVATLEKTYAAEKNPSVSKREELGKKVGLTEIQVRLWYNKKRF 116 56679*****************************************99995 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MAIKRLRTKW TPIQRETLEK AYSVERTPSE ATKEGLSKQL ELGYEQVTVW FMNRRAKDRR 60 QGIVAKKSRM TRHQVATLEK TYAAEKNPSV SKREELGKKV GLTEIQVRLW YNKKRFEDQG 120 KERKEKKKRG TGAKKPPKSA LASSCDHLAF VSADLTGIPN PDSPCKSYTR CQNPNENWCC 180 LCCKDVFCSV DLMNGHLFQH FKQTNHCLAV SCSDKSIWCY SCNSFLDAQA IPQLSAFSSS 240 SNASREPSSS SRLESPDASK DSSSSSRLEN LDALMVDVTD LISKPSLCPS FHPLDDNSLV 300 DQDKLALAKK GLQKIFDCGL EALADPHVQE EFLSYSATVL SVDSCPSELK TILSSFRGNL 360 SEETIAFLQA QHELKVASDL AASITERRFV LRYHHSKYAE VKKQIIASDE KVANLKAMIK 420 RLEASLAEEK SNREKIDRLL DSIETGVMDA RDGLLSDIEQ VSAMEGTTKA ANQLVAQRHS 480 AWENLRNTFT EVYGNLHAGE QHAEPTS

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MAIKRLRTKW TPIQRETLEK AYSVERTPSE ATKEGLSKQL ELGYEQVTVW FMNRRAKDRR  60
QGIVAKKSRM TRHQVATLEK TYAAEKNPSV SKREELGKKV GLTEIQVRLW YNKKRFEDQG  120
KERKEKKKRG TGAKKPPKSA LASSCDHLAF VSADLTGIPN PDSPCKSYTR CQNPNENWCC  180
LCCKDVFCSV DLMNGHLFQH FKQTNHCLAV SCSDKSIWCY SCNSFLDAQA IPQLSAFSSS  240
SNASREPSSS SRLESPDASK DSSSSSRLEN LDALMVDVTD LISKPSLCPS FHPLDDNSLV  300
DQDKLALAKK GLQKIFDCGL EALADPHVQE EFLSYSATVL SVDSCPSELK TILSSFRGNL  360
SEETIAFLQA QHELKVASDL AASITERRFV LRYHHSKYAE VKKQIIASDE KVANLKAMIK  420
RLEASLAEEK SNREKIDRLL DSIETGVMDA RDGLLSDIEQ VSAMEGTTKA ANQLVAQRHS  480
AWENLRNTFT EVYGNLHAGE QHAEPTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	60	NRRAKDRR
2	113	129	KKRFEDQGKERKEKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-11	HB-other family protein