PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0249541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 409aa MW: 46632.5 Da PI: 7.3089

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0249541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.5e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++++ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wk RcHm_v2.0_Chr6g0249541 8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNRMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWK 93 69**************************.99**********963433332556************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle RcHm_v2.0_Chr6g0249541 94 ATGRDKCIRN-TYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 *****9.8999**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MATSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNRMEP WELQERCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTYKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DPQGNLSSED GWVICRVFKK KNLFKVTGNN EGGSSSMNSS 180 DHHHHQQLTM NTNQLQARTF MHTHSSRSDT NQYLLRQQAF ELNRPHDPDQ DQDQLPPALH 240 YAHLNLQPPP QYSLFHSQAL NVPTNSHKTL AAYNDYSTLP SDSSPGHGMV KQLMTNPRDC 300 ESTGSESLRY QACEPGLEVN DTTCETNQQA IVNAGGRSSD DQGMSEWAML DRLVTSHLGN 360 EDSTSKGGAS AGARYDQDRN GSSTVNQINQ QQQQQLSLRG EMDFWGYAK

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MATSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNRMEP WELQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTYKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DPQGNLSSED GWVICRVFKK KNLFKVTGNN EGGSSSMNSS  180
DHHHHQQLTM NTNQLQARTF MHTHSSRSDT NQYLLRQQAF ELNRPHDPDQ DQDQLPPALH  240
YAHLNLQPPP QYSLFHSQAL NVPTNSHKTL AAYNDYSTLP SDSSPGHGMV KQLMTNPRDC  300
ESTGSESLRY QACEPGLEVN DTTCETNQQA IVNAGGRSSD DQGMSEWAML DRLVTSHLGN  360
EDSTSKGGAS AGARYDQDRN GSSTVNQINQ QQQQQLSLRG EMDFWGYAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-142	NAC family protein