PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0247821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 221aa MW: 24749.2 Da PI: 9.6538 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.7 | 2.7e-22 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr g++KKA+EL++LC+ae+a+i+fs+ k++ + RcHm_v2.0_Chr6g0247821 17 ANDSNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGRKVFSF 62 699************************************9999877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MVRKSKGRQK VEMVKMANDS NLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGRKVF 60 SFGHPCVETV VDRFLTRNPP LHHQNSGTMQ LIEAHRNANV RELNAELTQV SNELEAERKR 120 GEELNRVQRA SQGNCWWESP IEKMEMSHCE QLGGSLEELK KAVAKQVDRL LIQTTTNPNS 180 YFAAGSSGHP TLIPNGGFNG VPVMPTHPHP HAWNPGYGRF F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-71 | M-type_MADS family protein |