PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0245921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28339.3 Da PI: 9.6996 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.8 | 6e-18 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e sn qvtfskRr g++KKA+EL++L +ae+a+i+ s+ k y + RcHm_v2.0_Chr6g0245921 12 EKASNPQVTFSKRRFGVFKKASELCTLSGAEIALIVDSPAKKTYSF 57 7789***********************************9999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MGRQRIEVHK LEKASNPQVT FSKRRFGVFK KASELCTLSG AEIALIVDSP AKKTYSFGYP 60 SMEAVIDRYE NMNAPLANNG NTEQLMEAAR RRQTHYLMAE LDAINEDLHK ETLKRKVLNK 120 KEKAGQTQNW YERSVDCIND KEQLNFFKNV LRELGDMVAQ HSEMLRQKQV GLMQQNAAMV 180 QQAELMQQNT TIGAIRDLMQ PRAAAARPFY RGNSSSSNVM NPYGPMPSSS PLPPPAEPWN 240 PNLESRQFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 1e-37 | M-type_MADS family protein |