PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0083891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 140aa MW: 15720.7 Da PI: 4.9993 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.2 | 3.4e-23 | 36 | 93 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+W+KYGqK +k+ rsY++C ++C++kk+ e s+++p+ + ++Yeg Hnh+ RcHm_v2.0_Chr5g0083891 36 EDGYEWKKYGQKFIKNVGKFRSYFKCQNSNCRAKKRAEWSSSEPDELRVVYEGVHNHT 93 7********************************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence |
MSETDHHDED DQIYGEGEEV QDNTSSGGSN KLVIPEDGYE WKKYGQKFIK NVGKFRSYFK 60 CQNSNCRAKK RAEWSSSEPD ELRVVYEGVH NHTDNNASSA GSASHSQQPD SSSSLNPSTD 120 ANRYDLYTQV FGNQQGDKKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-16 | WRKY family protein |