PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0080371

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 1574aa MW: 178606 Da PI: 5.7876

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0080371	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	75.4	7.2e-24	1362	1422	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqKe+ g +fpr+YYrC ++ +Cp++k+v+r ++d ++e++++g+H+++ RcHm_v2.0_Chr5g0080371 1362 DDGFTWRKYGQKEIMGCRFPRAYYRCNHRnsyNCPATKQVQRLDNDHLTFEVINRGDHTCH 1422 8*************************99999************************97 PP
2	WRKY	84.9	7.5e-27	1493	1553	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqKe+ g fpr+YYrCt++ +Cp+kk+v+r ++dp ++e++Y+g+H+++ RcHm_v2.0_Chr5g0080371 1493 DDGFTWRKYGQKEIMGCSFPRGYYRCTHQnlyNCPAKKEVQRLDNDPLTFEVIYRGDHTCH 1553 8**************************9999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1574 aa Download sequence
MASIPKKTDA SLPSSAEPSS TARRWKYDVF LSFRGTDFLR GFPSHLYYQL QERGITTFMD 60 DSDLEAADDM SPTLLEAIEG SRLAIVVLTS NYASSARCLE QLTKICQIME DGTRILPVYY 120 VDPIDVRNQR GQFQDAFAIY EKYGQYTSEK VQQWRDALRK VGSLPGLNTR DYRTHRDFVE 180 AILESVCYKV QSGVEIEKVQ PIEINTRGPE VIEETTQAMD RLTDDDEVSA VGVYGMGGGG 240 KITLKNPLES SSSSAVEWKY DVYLSFRGVD IGRGFTSHLY DCLKKRGINA FMDELDLQVW 300 DSISGASIKA IEKSRFAIVV LSQDYVSSTW CLHELTKICE CMEDQGRILP VFYNVEPSDV 360 RYRKRSFGEA FDKHESSRRH TSDKVKRLID VLNHVASLFG WHAKLYKTDR ELVDNIVDFV 420 CSKVHPIEIE FTMSTGDFEA FESRRTAMNE VMKALTDDKV TAVGVYGIGG VGKTTMVEHV 480 SEAVQNNGMF QHVITAVVSK IPNLRKIQGT LADMLGFMFE EETEIGRSRR LMQNIRRGNR 540 ILIILDDIWE RIDLSNIGIP SYHELQRCNS KVLLTTRTQN VCCAMKCQSN ISLDVLSEED 600 SWTLFVNKAR MSFESTNFCD VAKKVARACA GLPVALIAVA KALGDKCLDD WTEAARRLEA 660 SQPANLEDGK VAFNCIKLSY DYLISDDARS CFLLCCLFPE DYDIQIEDLL KYGMGKGLFQ 720 DSSTMHDARA SAYSVVKYLK DCGLLLKSER DGCVKMHDVI RDVAIRVSSS EDGPLFFVQA 780 DCQLKEWPSI SAHDGYSAIS LIRNKICKLP EELVCPKLLI LFLQSNVWLN VIPECFFQSL 840 NVLRVLDLSQ TRISLLPTSF NILINLQTLY LDGCLSTIDN ISILGNLKKL EILSMKELPL 900 VELPKEIGDL NHLRMLDITG DYVDNVPSEV ICNLTSLEEL YMQCNFADWR SKVEGAGEEI 960 IVAFDELTGL SYLNVLKVFI SDAKCLPRDV EVEPNWVKFD ICISRDPSIR KGSLVSSSSP 1020 AFVRALTLDT SINALPGWFI NVVTMKAEKL QYIMCWGLDN ILVEFDCGRL HALKYLSVIG 1080 PNENLKVLMN TVTRFRNEPV FQNLEELHLI QVDCLKELCV GELPPGSLCN LRLLKVKHCY 1140 ELVDALLPSQ LLQRLQNLKE LICEEMDELK YIFGCEELEP KQLILTELIE MRLENLGKLI 1200 KIWNGPAHCA VFRNLQSLVV SRCFELETLF TADVAQCFLH LGDLSVELCP MLDSIIEASK 1260 DTVDNMIVFP ELKNLTLIKL PQLTRFTRFC GSTGNAIECP LLEYLYVERC PQFSTSDFHS 1320 RNKVQFNHPQ QLDIVQRRRD HGEIRKLTVP APQIGNTEIP PDDGFTWRKY GQKEIMGCRF 1380 PRAYYRCNHR NSYNCPATKQ VQRLDNDHLT FEVINRGDHT CHMSSTAPSS LPPSDQTVER 1440 FPQFSMSGFH SRNKVQFNHP QQLDIVKRRR DRGEIRKLTV PAPQIGSTEI PPDDGFTWRK 1500 YGQKEIMGCS FPRGYYRCTH QNLYNCPAKK EVQRLDNDPL TFEVIYRGDH TCHMSSTAPS 1560 SLPPSDQIGR GSSP

Sequence ? help Back to Top

Protein Sequence Length: 1574 aa Download sequence

MASIPKKTDA SLPSSAEPSS TARRWKYDVF LSFRGTDFLR GFPSHLYYQL QERGITTFMD  60
DSDLEAADDM SPTLLEAIEG SRLAIVVLTS NYASSARCLE QLTKICQIME DGTRILPVYY  120
VDPIDVRNQR GQFQDAFAIY EKYGQYTSEK VQQWRDALRK VGSLPGLNTR DYRTHRDFVE  180
AILESVCYKV QSGVEIEKVQ PIEINTRGPE VIEETTQAMD RLTDDDEVSA VGVYGMGGGG  240
KITLKNPLES SSSSAVEWKY DVYLSFRGVD IGRGFTSHLY DCLKKRGINA FMDELDLQVW  300
DSISGASIKA IEKSRFAIVV LSQDYVSSTW CLHELTKICE CMEDQGRILP VFYNVEPSDV  360
RYRKRSFGEA FDKHESSRRH TSDKVKRLID VLNHVASLFG WHAKLYKTDR ELVDNIVDFV  420
CSKVHPIEIE FTMSTGDFEA FESRRTAMNE VMKALTDDKV TAVGVYGIGG VGKTTMVEHV  480
SEAVQNNGMF QHVITAVVSK IPNLRKIQGT LADMLGFMFE EETEIGRSRR LMQNIRRGNR  540
ILIILDDIWE RIDLSNIGIP SYHELQRCNS KVLLTTRTQN VCCAMKCQSN ISLDVLSEED  600
SWTLFVNKAR MSFESTNFCD VAKKVARACA GLPVALIAVA KALGDKCLDD WTEAARRLEA  660
SQPANLEDGK VAFNCIKLSY DYLISDDARS CFLLCCLFPE DYDIQIEDLL KYGMGKGLFQ  720
DSSTMHDARA SAYSVVKYLK DCGLLLKSER DGCVKMHDVI RDVAIRVSSS EDGPLFFVQA  780
DCQLKEWPSI SAHDGYSAIS LIRNKICKLP EELVCPKLLI LFLQSNVWLN VIPECFFQSL  840
NVLRVLDLSQ TRISLLPTSF NILINLQTLY LDGCLSTIDN ISILGNLKKL EILSMKELPL  900
VELPKEIGDL NHLRMLDITG DYVDNVPSEV ICNLTSLEEL YMQCNFADWR SKVEGAGEEI  960
IVAFDELTGL SYLNVLKVFI SDAKCLPRDV EVEPNWVKFD ICISRDPSIR KGSLVSSSSP  1020
AFVRALTLDT SINALPGWFI NVVTMKAEKL QYIMCWGLDN ILVEFDCGRL HALKYLSVIG  1080
PNENLKVLMN TVTRFRNEPV FQNLEELHLI QVDCLKELCV GELPPGSLCN LRLLKVKHCY  1140
ELVDALLPSQ LLQRLQNLKE LICEEMDELK YIFGCEELEP KQLILTELIE MRLENLGKLI  1200
KIWNGPAHCA VFRNLQSLVV SRCFELETLF TADVAQCFLH LGDLSVELCP MLDSIIEASK  1260
DTVDNMIVFP ELKNLTLIKL PQLTRFTRFC GSTGNAIECP LLEYLYVERC PQFSTSDFHS  1320
RNKVQFNHPQ QLDIVQRRRD HGEIRKLTVP APQIGNTEIP PDDGFTWRKY GQKEIMGCRF  1380
PRAYYRCNHR NSYNCPATKQ VQRLDNDHLT FEVINRGDHT CHMSSTAPSS LPPSDQTVER  1440
FPQFSMSGFH SRNKVQFNHP QQLDIVKRRR DRGEIRKLTV PAPQIGSTEI PPDDGFTWRK  1500
YGQKEIMGCS FPRGYYRCTH QNLYNCPAKK EVQRLDNDPL TFEVIYRGDH TCHMSSTAPS  1560
SLPPSDQIGR GSSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	2e-39	WRKY family protein