PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0078151
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family EIL
Protein Properties Length: 605aa    MW: 67685 Da    PI: 5.3583
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0078151genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3428.75.6e-131373731319
                             XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvega 87 
                             eel++rmwkd+++lkr+ke++k   e+++a ++  k +++++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+ga
  RcHm_v2.0_Chr5g0078151  37 EELERRMWKDRIKLKRIKEKQKI--EAQQA-AERLKPKQTTDQARRKKMSRAQDGILKYMLKLMEVCQARGFVYGIIPEKGKPVSGA 120
                             8**************99998885..55666.889999************************************************** PP

                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH-- CS
                    EIN3  88 sdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWP 174
                             sd++raWWkekv+fd+ngpaai ky+a+ l++++++++  ++ ++++ l++lqD+tlgSLLs+lmqhcdppqr++plek+v+pPWWP
  RcHm_v2.0_Chr5g0078151 121 SDNIRAWWKEKVKFDKNGPAAIDKYEAEILAMTDADNN--RNGNSQTILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKAVPPPWWP 205
                             ****************************9999998888..7899******************************************* PP

                             -S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XX CS
                    EIN3 175 tGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvs 261
                             tG+e+ww + gl+  q+ ppykkphdlkk+wkv+vLtavikhmsp+i++ir+++rqsk+lqdkm+akes+++l vl++ee+++++ s
  RcHm_v2.0_Chr5g0078151 206 TGSEDWWMKSGLPCGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREEALIRQPS 291
                             ****************9.9******************************************************************** PP

                             XXXX........XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.........................XXXXXXXXXXXXX CS
                    EIN3 262 ahss........slrkqspkvtlsceqkedvegkkeskikhvqavktta.........................gfpvvrkrkkkps 315
                             +++            +++++ t+s+++++dv+g++++ i + +  ++ +                         +         +++
  RcHm_v2.0_Chr5g0078151 292 SDNGtsgitempRRGRGEKHATASSNSDYDVDGTDKELIDAGSVSSKDDrrtelmdvepssnlrsstptnhvqdK---------ERG 369
                             **444567775433449999************8888886643333333355688998999999986665555532.........222 PP

                             XXXX CS
                    EIN3 316 esak 319
                             e++ 
  RcHm_v2.0_Chr5g0078151 370 EKRR 373
                             2222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    
MGDLGEVGPE ISSDIEEDLR CDNLVEKDVS DEEIDPEELE RRMWKDRIKL KRIKEKQKIE  60
AQQAAERLKP KQTTDQARRK KMSRAQDGIL KYMLKLMEVC QARGFVYGII PEKGKPVSGA  120
SDNIRAWWKE KVKFDKNGPA AIDKYEAEIL AMTDADNNRN GNSQTILQDL QDATLGSLLS  180
SLMQHCDPPQ RKYPLEKAVP PPWWPTGSED WWMKSGLPCG QSPPYKKPHD LKKMWKVGVL  240
TAVIKHMSPD IAKIRRHVRQ SKCLQDKMTA KESAIWLGVL SREEALIRQP SSDNGTSGIT  300
EMPRRGRGEK HATASSNSDY DVDGTDKELI DAGSVSSKDD RRTELMDVEP SSNLRSSTPT  360
NHVQDKERGE KRRKRKRAPV RPSSDDKLPA PSHNEPLHVE PLNALPDINH TDAQMIGFPI  420
HENQQENVSV TTLRPPEQDL DVQALPASEF NYYADVPPDG VTATTQGMHV GGTPLLYHGM  480
QSAEMHHGNM YNLYNPSAEL VPGHDRQLSQ IGMNELQIGP ADVVPLQTIR NGNEITGGDM  540
PFYAKDPFQS EQDRTVDANF GSSIDSLSLD YGGLFNSPFR LDLGIEGTGS LDDLNVDEMM  600
AYFAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371377KRRKRKR
2372377RRKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0EIL family protein