PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0074111
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 453aa    MW: 51402.3 Da    PI: 6.6305
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0074111genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.87.6e-120564522373
                    GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.............s 74 
                             ++lL++cAe +s+ d++ a++l++ ls   +sp+gd+++Rl++ f++AL+ rl+       +++++ +++ ++              
  RcHm_v2.0_Chr5g0074111  56 RQLLISCAELISQLDFSSARRLISILSSSnSSPYGDSTERLVHQFVRALSLRLSAVEAAPRETVSVAAATASSastsntlleveteA 142
                             799***********************99879**********************9844333333322222222212223465544331 PP

                    GRAS  75 seelaal....kl....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp........egppslRi 144
                                        +     +++++P+++fshltaNqaIlea+++  +++Hi+Dfdi++G+QWp+L+qaLa+R+        ++pp+lRi
  RcHm_v2.0_Chr5g0074111 143 ------EeealQScyltLNQITPYIRFSHLTANQAILEAIDSThHAIHILDFDIKHGVQWPPLMQALAERSygsssslhHPPPMLRI 223
                             ......13333113456***********************998799*************************655555544499**** PP

                    GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227
                             T+ g+    + + l++tgerL +fA++lg++f+f+++     +  ++ l++ +L + ++EalaVn+vl lhrll +++   +    +
  RcHm_v2.0_Chr5g0074111 224 TATGR----DLTLLRRTGERLLRFAQSLGLTFHFRPIvllnDVAMIDYLNPASLGLFSDEALAVNCVLYLHRLLTDDARDLH---LF 303
                             *****....9**************************9654434468889*************************77666666...9* PP

                    GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre..rhetl 312
                             L+ +++l+Pk+v+v+e+ea+hns+ F++rf+ea+++y a+f slea+lp++s+er  vE++++grei +vva+  ++rr+  rhe++
  RcHm_v2.0_Chr5g0074111 304 LDKIRGLNPKIVTVAEREANHNSPMFFNRFVEAVDHYGAVFGSLEATLPPNSRERLAVEQVWFGREIADVVAADDDQRRKqlRHERY 390
                             *************************************************************************9999765459**** PP

                    GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                             e+W+++++++GF++vpls +a +qaklllr ++ s+gy++++ ++s++lgW++rpL+svS+W
  RcHm_v2.0_Chr5g0074111 391 ENWEMMMRRSGFSNVPLSPFALSQAKLLLRLHYpSEGYQLHSLKDSFFLGWMNRPLFSVSSW 452
                             ************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    
MLMGSFNSSH HQRIVPQQQE DQDPEIHPDL QLYNQHQHQY QIAQQPLLMS RGLTSRQLLI  60
SCAELISQLD FSSARRLISI LSSSNSSPYG DSTERLVHQF VRALSLRLSA VEAAPRETVS  120
VAAATASSAS TSNTLLEVET EAEEEALQSC YLTLNQITPY IRFSHLTANQ AILEAIDSTH  180
HAIHILDFDI KHGVQWPPLM QALAERSYGS SSSLHHPPPM LRITATGRDL TLLRRTGERL  240
LRFAQSLGLT FHFRPIVLLN DVAMIDYLNP ASLGLFSDEA LAVNCVLYLH RLLTDDARDL  300
HLFLDKIRGL NPKIVTVAER EANHNSPMFF NRFVEAVDHY GAVFGSLEAT LPPNSRERLA  360
VEQVWFGREI ADVVAADDDQ RRKQLRHERY ENWEMMMRRS GFSNVPLSPF ALSQAKLLLR  420
LHYPSEGYQL HSLKDSFFLG WMNRPLFSVS SWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-109GRAS family protein