PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0073201

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 965aa MW: 106337 Da PI: 7.5247

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0073201	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59	8.6e-19	356	456	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ l+++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F+ RcHm_v2.0_Chr5g0073201 356 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFS 441 99************************555556677***********99899999999.******************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 +++ + +lv++++++ RcHm_v2.0_Chr5g0073201 442 RID-PGNKLVIGFRKA 456 887.777789988875 PP

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence
MATKICMNVS CGTSNTHEWK NGWPLRSGGF AHLCYKCGAA YEKSVFCDTF HLRETGWRDC 60 SSCHKPLHCG CVASRSLYEC LDYGGVGCIA CANSSQPRVI QRNDVLNGFG GLTLSNASDR 120 KSTSVEYRAV GDTVDEGKFL QLCGTVDEGK LLQLCKIMEA NESTLLPQSP TGEESVFLES 180 NLLPRPQRDD ISESLGQTKG QEVIHQIGEV STGFFSATQS SIGSLTFAQP DNGRTMLEVN 240 HMSIPSSQPS LSMSLGAPSA TPNFVQPFSG GHVDIRDQSK SPSAFQQVQK PRPILPRPLK 300 PALPISLETN KGARIARPPA EGRGKNQLLP RYWPRITDQE LQKLSGALNS TIVPLFEKVL 360 SASDAGRIGR LVLPKACAEA YFPPISQSEG LPLRIQDVKG NEWTFQFRFW PNNNSRMYVL 420 EGVTPCIQSM QLQAGDTVTF SRIDPGNKLV IGFRKASQSV NMQGTQTSVL PNGTPGETSF 480 SSENLAAGSG DSSLFHMNKG SKDPHLNSPS DHHLAEWDTY MQKSENGHRT SEDLLQPVSN 540 SEKKRTRNIG PKSKRLLMHS EDVLELRLTW EEAQDLLRPP PSVKPSIVTI EDFEFEEYDE 600 PPVFGKRSIF TTGPSKRQEQ WAQCDNCSKW RKLPVDILLP PKWTCSDNSW DSSRCSCAAP 660 EEMSPKQLDN LLSSSLSLKG LKKRRKIIEK KEAEEQEPSG LDALASAAIL GDNVRDSGEQ 720 LVGATTKHPR HRPGCTCIVC IQPPSGKGKH KPSCKCNVCL TVKRRFTTMM QRKNEKRQLE 780 REAENSQRKN DKHKDESEVN GITSGDTALH MNHSAENSQR NNNNHKDESE MNGTTSGDAG 840 LHRNHSSENG ASSSHSRTQA AAAESSSARQ IDLNCEPFGL FRNSTLQDLL KLAKAASAAR 900 PLEKYTNENS LRTMMCEEQA GLASCSLTQA NGDNERRLPN EARISSVAWD CPSIGDKVYR 960 EPDLD

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence

MATKICMNVS CGTSNTHEWK NGWPLRSGGF AHLCYKCGAA YEKSVFCDTF HLRETGWRDC  60
SSCHKPLHCG CVASRSLYEC LDYGGVGCIA CANSSQPRVI QRNDVLNGFG GLTLSNASDR  120
KSTSVEYRAV GDTVDEGKFL QLCGTVDEGK LLQLCKIMEA NESTLLPQSP TGEESVFLES  180
NLLPRPQRDD ISESLGQTKG QEVIHQIGEV STGFFSATQS SIGSLTFAQP DNGRTMLEVN  240
HMSIPSSQPS LSMSLGAPSA TPNFVQPFSG GHVDIRDQSK SPSAFQQVQK PRPILPRPLK  300
PALPISLETN KGARIARPPA EGRGKNQLLP RYWPRITDQE LQKLSGALNS TIVPLFEKVL  360
SASDAGRIGR LVLPKACAEA YFPPISQSEG LPLRIQDVKG NEWTFQFRFW PNNNSRMYVL  420
EGVTPCIQSM QLQAGDTVTF SRIDPGNKLV IGFRKASQSV NMQGTQTSVL PNGTPGETSF  480
SSENLAAGSG DSSLFHMNKG SKDPHLNSPS DHHLAEWDTY MQKSENGHRT SEDLLQPVSN  540
SEKKRTRNIG PKSKRLLMHS EDVLELRLTW EEAQDLLRPP PSVKPSIVTI EDFEFEEYDE  600
PPVFGKRSIF TTGPSKRQEQ WAQCDNCSKW RKLPVDILLP PKWTCSDNSW DSSRCSCAAP  660
EEMSPKQLDN LLSSSLSLKG LKKRRKIIEK KEAEEQEPSG LDALASAAIL GDNVRDSGEQ  720
LVGATTKHPR HRPGCTCIVC IQPPSGKGKH KPSCKCNVCL TVKRRFTTMM QRKNEKRQLE  780
REAENSQRKN DKHKDESEVN GITSGDTALH MNHSAENSQR NNNNHKDESE MNGTTSGDAG  840
LHRNHSSENG ASSSHSRTQA AAAESSSARQ IDLNCEPFGL FRNSTLQDLL KLAKAASAAR  900
PLEKYTNENS LRTMMCEEQA GLASCSLTQA NGDNERRLPN EARISSVAWD CPSIGDKVYR  960
EPDLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	682	686	KKRRK
2	763	777	KRRFTTMMQRKNEKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein