PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0071811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 623aa MW: 68204.9 Da PI: 7.667

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0071811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.2	1.7e-33	271	328	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k RcHm_v2.0_Chr5g0071811 271 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 328 8**************************************.*************85 PP
2	WRKY	105.4	3e-33	446	504	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+ RcHm_v2.0_Chr5g0071811 446 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 504 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MASSSGSLDT SANSHPSNFT FSTHPFMTTS FSDLLSSGAD TTNPIATVTR NSGYGLSDRI 60 AERTGSGVPK FKSLPPPQLP ISPPSVVSPS SYFAIPPGMS PAELLDSPVL LSSSNILPSP 120 TTGSFAAQAF NWRTNSGSGT NNNNNNRSVK EEHKNYSDFS FQTQTRALPT SSSAIFQSSN 180 SSIQTAQEQA WNNYLGPPKQ DNFSSGKSMV KPEYGSSVQS FSSEMGTNMQ SNNNAQPNSS 240 GGFQSDQYGN YNNNSNNNQL QSHQCLNRRS DDGFNWRKYG QKQVKGSENP RSYYKCTYPN 300 CPTKKKVERS LDGQITEIVY KGNHNHPKPQ NTRRSGSSAA SSHAIQASNH TTNDIPDQSF 360 GSHGNSQMDN SIGTPENSSN FSNGDDELDQ SSQRSKSGGG DEYDEDEPNA KRWKKEGDNE 420 CISAPGSRTV REPRVVVQTT SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCPVR 480 KHVERASHDL RAVITTYEGK HNHDVPAARG SGSANRPLPS HNTNNNNNMN NNHNVPTAMR 540 PMTHHSTNNA ANNNPLDNLR LPTSEGQAPF TLEMLQSPAS YGFAGFDNPM GSYMNQTQLN 600 DNNIFSKTKD EPRDDAFFES LLC

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MASSSGSLDT SANSHPSNFT FSTHPFMTTS FSDLLSSGAD TTNPIATVTR NSGYGLSDRI  60
AERTGSGVPK FKSLPPPQLP ISPPSVVSPS SYFAIPPGMS PAELLDSPVL LSSSNILPSP  120
TTGSFAAQAF NWRTNSGSGT NNNNNNRSVK EEHKNYSDFS FQTQTRALPT SSSAIFQSSN  180
SSIQTAQEQA WNNYLGPPKQ DNFSSGKSMV KPEYGSSVQS FSSEMGTNMQ SNNNAQPNSS  240
GGFQSDQYGN YNNNSNNNQL QSHQCLNRRS DDGFNWRKYG QKQVKGSENP RSYYKCTYPN  300
CPTKKKVERS LDGQITEIVY KGNHNHPKPQ NTRRSGSSAA SSHAIQASNH TTNDIPDQSF  360
GSHGNSQMDN SIGTPENSSN FSNGDDELDQ SSQRSKSGGG DEYDEDEPNA KRWKKEGDNE  420
CISAPGSRTV REPRVVVQTT SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCPVR  480
KHVERASHDL RAVITTYEGK HNHDVPAARG SGSANRPLPS HNTNNNNNMN NNHNVPTAMR  540
PMTHHSTNNA ANNNPLDNLR LPTSEGQAPF TLEMLQSPAS YGFAGFDNPM GSYMNQTQLN  600
DNNIFSKTKD EPRDDAFFES LLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-106	WRKY family protein