PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 669aa    MW: 76904.6 Da    PI: 6.2462
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.51.5e-1112986672374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++ L +cA+av+s ++  a++lL+++++++sp+g ++qRla+yf+++L+arl++ ++  ++ l +++ts    +e l a++++   +
  RcHm_v2.0_Chr5g0065811 298 TTMLNQCAQAVASYEQGTASKLLKKMRQHSSPHGHATQRLAHYFANGLEARLTGVGTPSFSPLFSRQTS---AAEYLLAYQVYTTSC 381
                             5789**************************************************999999888888888...9************** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P+  +s+l aN++I++ +++e+r+HiiDf+is+G+QWp L+q L++Rp+gpp+l iTg++ p++g   +e++eetg+rLa+++++++
  RcHm_v2.0_Chr5g0065811 382 PFKMMSQLFANRTIMKLAKNETRLHIIDFGISYGFQWPFLIQHLSERPNGPPKLHITGIELPQPGfrPRERVEETGRRLARYCAKFN 468
                             ****************************************************************9********************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             vpfe+++ +++r+e+++ e+L+++++E ++Vn+  +l++++de+v  +s+rd+vL+l+k++ P+++++   +  +n++ F++rf ea
  RcHm_v2.0_Chr5g0065811 469 VPFEYDL-IVQRWETIQCEDLKIDRNELVVVNCLNRLKHIHDETVMENSPRDTVLNLIKNIDPHLFIHGIVNGTYNTPFFATRFKEA 554
                             ******9.7****************************************************************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                             l +y a+fd++ea++pre+e r+ +Ere  gr+ +n+vaceg er+er et++kW+ r  +aG+k++pl++++ k++k l + +++d
  RcHm_v2.0_Chr5g0065811 555 LLHYYAVFDMFEATIPREDERRMIIEREKCGRDMMNIVACEGVERFERPETYKKWQIRNVRAGLKQLPLDQEELKKVKNLYKGYHND 641
                             *************************************************************************************77 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              +rvee+ +++++gWk+r L ++S W+
  RcHm_v2.0_Chr5g0065811 642 -FRVEEDGQWILQGWKGRILRALSLWT 667
                             .*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    
MDTLFDRFSG RIEGLYFGHA PTSTFNPNLA DGCKVTQEST NTLIYPANLD YPSDLSKSLS  60
PDSEEETVDV SYSNNPVIKY ISDILLEEDL EDESCMLQDY LAVQAAEKSF YDVLNPNDPH  120
SPNKASLGES FSDALLVSDS LFERQSLGNF GNVGEANKVL PNGEFDIIDK ERYELLPVAR  180
SNLVKRNLAS DKKNDVNNPT DGMKGKKNHH REDGDYPEEG RSSKQSVVSA DDSEPQEMFD  240
KVLLCQAEHH HREWESCTPH CSMKREETEQ LQQNRQPKGS KTNRSKRQNK DEEGIDLTTM  300
LNQCAQAVAS YEQGTASKLL KKMRQHSSPH GHATQRLAHY FANGLEARLT GVGTPSFSPL  360
FSRQTSAAEY LLAYQVYTTS CPFKMMSQLF ANRTIMKLAK NETRLHIIDF GISYGFQWPF  420
LIQHLSERPN GPPKLHITGI ELPQPGFRPR ERVEETGRRL ARYCAKFNVP FEYDLIVQRW  480
ETIQCEDLKI DRNELVVVNC LNRLKHIHDE TVMENSPRDT VLNLIKNIDP HLFIHGIVNG  540
TYNTPFFATR FKEALLHYYA VFDMFEATIP REDERRMIIE REKCGRDMMN IVACEGVERF  600
ERPETYKKWQ IRNVRAGLKQ LPLDQEELKK VKNLYKGYHN DFRVEEDGQW ILQGWKGRIL  660
RALSLWTPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-166GRAS family protein