PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 662aa    MW: 76099.4 Da    PI: 6.5394
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.26.7e-1142896602374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++ L +cA+av+s ++  a++lL+++++++sp+g ++qRla+yf+++L+arl++ ++  ++ l +++ts    +e l+a+++f   +
  RcHm_v2.0_Chr5g0065791 289 TTMLNQCAQAVASYEQGTASELLKKIRQHSSPHGHATQRLAHYFANGLEARLTGVGTPSFSPLFSRQTS---AAEILQAYEVFTTST 372
                             5789**************************************************999999888888888...9************** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P+ ++s+++aN++I++ + +e+r+HiiDf+is+G+QWp+L+q L++Rp+gpp+l iT+++ p++g   +e++eetg+rLa++++++ 
  RcHm_v2.0_Chr5g0065791 373 PFKTISQFLANRTIMKLARNETRLHIIDFGISYGFQWPCLIQHLSNRPNGPPKLHITAIELPQPGfrPTERVEETGHRLARYCAKFS 459
                             ****************************************************************9********************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             vpfe+nv +a+++e+++ e+L+++++E ++Vn+ ++l++++de+v  +s+rd+vLkl+k+++P+++++  ++  hn++ F++rf ea
  RcHm_v2.0_Chr5g0065791 460 VPFEYNV-IAQKWETIQCEDLKLDKKELVVVNCLHRLKHIHDETVMENSPRDAVLKLIKNINPNLFIHGISNGTHNTPFFATRFREA 545
                             ******9.7****************************************************************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                             l +y a+fd++ea++pre++ r+++E+ + gr+i+n++aceg er+er et++kW+ r  +aG+k++pl+ +  k+ak l + ++  
  RcHm_v2.0_Chr5g0065791 546 LLHYYAVFDMFEATIPREENRRMMLEKDFHGRDIMNIIACEGVERVERPETYKKWQIRNVRAGLKQLPLDRELLKKAKKLSELMGyH 632
                             ***********************************************************************************9999 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + +r++e+ ++++ gWk+r ++++S+W+
  RcHm_v2.0_Chr5g0065791 633 NDFRLDEDGHWMLHGWKGRIITALSFWK 660
                             99*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    
MDTFFDRVSG PTERFKFGHA STSVTSNPNL DNRFQINQES TDTLFHPSDS ATSLSPDSEE  60
ETFDINYFNN PMLKYISDIL LDEELEGKNC MLQDSLSLQA AEKSFYDVLN PKDPPPPNQL  120
PLPVYQNFEH SDDDSTHMLH QSSLVESFSD TLLVSDSHFK KQSLGNFEQA GEANKFLTNG  180
NFGFINEERY QTNGLKGKKN HQRDDENYPE EGRNSKQSVV SADDSEPQEM FDKVLLCQGD  240
HHQEWESCTP HCSMKREGTE QLQHNKQSKG SNTNRSKRQN KDEEAVDLTT MLNQCAQAVA  300
SYEQGTASEL LKKIRQHSSP HGHATQRLAH YFANGLEARL TGVGTPSFSP LFSRQTSAAE  360
ILQAYEVFTT STPFKTISQF LANRTIMKLA RNETRLHIID FGISYGFQWP CLIQHLSNRP  420
NGPPKLHITA IELPQPGFRP TERVEETGHR LARYCAKFSV PFEYNVIAQK WETIQCEDLK  480
LDKKELVVVN CLHRLKHIHD ETVMENSPRD AVLKLIKNIN PNLFIHGISN GTHNTPFFAT  540
RFREALLHYY AVFDMFEATI PREENRRMML EKDFHGRDIM NIIACEGVER VERPETYKKW  600
QIRNVRAGLK QLPLDRELLK KAKKLSELMG YHNDFRLDED GHWMLHGWKG RIITALSFWK  660
PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-176GRAS family protein