PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0065721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GRAS | ||||||||
Protein Properties | Length: 234aa MW: 27955.4 Da PI: 9.5418 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 226.7 | 1.1e-69 | 4 | 231 | 75 | 317 |
GRAS 75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161 ++ l+a++++ +++P+ +s++ aN++I + +e+++r+HiiDf+i +G QWp L+q+La+Rp+gpp+lRiT++++ RcHm_v2.0_Chr5g0065721 4 ADILKAYQTYIKACPFKLMSNIYANKTIFKLTEKATRLHIIDFGILYGYQWPGLIQSLAKRPSGPPMLRITVLKR------------ 78 67899**********************************************************************............ PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 +rLak++++++ pfe+n+ +a+++e++++++++++++E ++Vn+ +l +l+ e+++++s+rd+vLkl+++++P++ ++ + + RcHm_v2.0_Chr5g0065721 79 -HRLAKYCKRFNGPFEYNF-IAQDWETIRYQDIKLDRDELTVVNCLCRLRNLP-EETEMRSPRDRVLKLIRRINPDMYIHGLVNGTY 162 .9*****************.7*******************************9.78888899************************* PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 n++ F rf eal+++s+lfd+++++lpre+++r +E+e+lgr+i nv+aceg++r er et+++W+ RcHm_v2.0_Chr5g0065721 163 NAPFFEIRFREALYHFSSLFDMFDETLPREDQQRLLYEQEILGRDIINVIACEGSRRLERPETYKQWQI 231 *******************************************************************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MSAADILKAY QTYIKACPFK LMSNIYANKT IFKLTEKATR LHIIDFGILY GYQWPGLIQS 60 LAKRPSGPPM LRITVLKRHR LAKYCKRFNG PFEYNFIAQD WETIRYQDIK LDRDELTVVN 120 CLCRLRNLPE ETEMRSPRDR VLKLIRRINP DMYIHGLVNG TYNAPFFEIR FREALYHFSS 180 LFDMFDETLP REDQQRLLYE QEILGRDIIN VIACEGSRRL ERPETYKQWQ IRNT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 8e-96 | GRAS family protein |