PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065651
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 344aa    MW: 39829 Da    PI: 9.4174
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1264.4e-39212913143
                    GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                             +s d++++++lL+++++++sp+gd++qRl +yf+ +L+arla++++  y+ +++ +ts    ++ l a++l++ +sP+ k+s+++aN
  RcHm_v2.0_Chr5g0065651   2 ASYDQRAVNELLKQIRQHSSPHGDATQRLSHYFADGLEARLAGTMTPSYSPVASMQTS---AADILRAHRLYVTASPLKKMSNFVAN 85 
                             678999*************************************999999888888887...9************************* PP

                    GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslR 143
                              +I+e ++ ++r+HiiDf+is+G+QWp+L+q +++Rp+gpp+ +
  RcHm_v2.0_Chr5g0065651  86 TTIMELAKDATRLHIIDFGISYGFQWPCLIQHISERPGGPPRYK 129
                             *****************************************865 PP
2GRAS176.52e-54152342185374
                    GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                             ++e++++e+L+++++E ++Vn++++l ++lde+v + s+rd+vLkl+k+++P+++v+   +  ++ + F++rf eal ++ alfd++
  RcHm_v2.0_Chr5g0065651 152 KWESIRVEDLNIDRNELIVVNCMHRLRHILDETVMVGSPRDRVLKLIKKINPDLFVHGIINGTYSPPFFVTRFKEALFHFGALFDMF 238
                             7899*********************************************************************************** PP

                    GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                             ea +pre+++r+  Ere+ gr+i nvvaceg er+er et+++W+ r  + GFk+vpl+++  +++k++l+ ++  + ++++e+ ++
  RcHm_v2.0_Chr5g0065651 239 EAIVPREDQWRQIFEREIYGRDIINVVACEGLERVERPETYKQWNLRTLRTGFKQVPLEQDCLMKVKSMLKLTGyHKDFKIDEDGEW 325
                             *************************************************************************99999********* PP

                    GRAS 358 lvlgWkdrpLvsvSaWr 374
                             +++gWk+r+++++S+W+
  RcHm_v2.0_Chr5g0065651 326 MLQGWKGRTVMALSFWK 342
                             ****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MASYDQRAVN ELLKQIRQHS SPHGDATQRL SHYFADGLEA RLAGTMTPSY SPVASMQTSA  60
ADILRAHRLY VTASPLKKMS NFVANTTIME LAKDATRLHI IDFGISYGFQ WPCLIQHISE  120
RPGGPPRYKS QQLSFPNEVF DLQKGLKRPG VKWESIRVED LNIDRNELIV VNCMHRLRHI  180
LDETVMVGSP RDRVLKLIKK INPDLFVHGI INGTYSPPFF VTRFKEALFH FGALFDMFEA  240
IVPREDQWRQ IFEREIYGRD IINVVACEGL ERVERPETYK QWNLRTLRTG FKQVPLEQDC  300
LMKVKSMLKL TGYHKDFKID EDGEWMLQGW KGRTVMALSF WKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-132GRAS family protein