PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 276aa    MW: 32457.7 Da    PI: 9.394
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS263.38.5e-814274106374
                    GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                             + +e+r+HiiDf+is+G+QWp+L+q L++Rp+gpp+l iT+++ p++g   +e++eetg+rLa++++++ vpfe+nv +a+++e+++
  RcHm_v2.0_Chr5g0065631   4 ARNETRLHIIDFGISYGFQWPCLIQHLSNRPNGPPKLHITAIELPQPGfrPTERVEETGRRLARYCAKFSVPFEYNV-IAQKWETIQ 89 
                             56899******************************************9****************************9.7******** PP

                    GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                              e+L+++++E ++Vn+ ++l +++de+v  +s rd vLkl+k+++P+++++   +  hn++ F++ f eal ++ alfd  ea++pr
  RcHm_v2.0_Chr5g0065631  90 CEDLKIDRNELVVVNCLHRLRHIHDETVMENSLRDVVLKLIKNINPNLFIHGIVNGTHNTPFFATLFREALLHFYALFDIHEATIPR 176
                             *************************************************************************************** PP

                    GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                             e++ r+++E+ l gr+i+n+vaceg er+er et++kW+ r  +aG+k++pl+++  k+ak l + ++  + +rv+e+ ++++ g k
  RcHm_v2.0_Chr5g0065631 177 EEKRRMMLEKDLHGRDIMNIVACEGVERVERPETYKKWQIRNVRAGLKQLPLDQELLKKAKKLSELMGyHNDFRVDEDGHWMLHGRK 263
                             ******************************************************************999999*************** PP

                    GRAS 364 drpLvsvSaWr 374
                             ++ ++++S+W+
  RcHm_v2.0_Chr5g0065631 264 GKIITALSFWK 274
                             **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MKLARNETRL HIIDFGISYG FQWPCLIQHL SNRPNGPPKL HITAIELPQP GFRPTERVEE  60
TGRRLARYCA KFSVPFEYNV IAQKWETIQC EDLKIDRNEL VVVNCLHRLR HIHDETVMEN  120
SLRDVVLKLI KNINPNLFIH GIVNGTHNTP FFATLFREAL LHFYALFDIH EATIPREEKR  180
RMMLEKDLHG RDIMNIVACE GVERVERPET YKKWQIRNVR AGLKQLPLDQ ELLKKAKKLS  240
ELMGYHNDFR VDEDGHWMLH GRKGKIITAL SFWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-114GRAS family protein