PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 584aa    MW: 67549.5 Da    PI: 8.5759
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.42.8e-1142135822374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++ L +cA+av+s ++  a++lL+++++++sp+g ++qRla+yf+++L+arl++ ++  ++ l +++ts    +e l a++++   +
  RcHm_v2.0_Chr5g0065621 213 TTMLNQCAQAVASYEQGTASELLKKIRQHSSPHGHATQRLAHYFANGLEARLTGVGTPSFSPLFSRQTS---AAEYLLAYQVYTTSC 296
                             5789**************************************************999999888888888...9************** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P+  +s+l aN++I++ +++e+r+HiiDf+is+G+QWp L+q L++Rp+gpp+l iTg++ p+ g   +e++eetg+rLa+++++++
  RcHm_v2.0_Chr5g0065621 297 PFKMMSQLFANRTIMKLAKNETRLHIIDFGISYGFQWPFLIQHLSERPNGPPKLHITGIELPQRGfrPRERVEETGHRLARYCAKFN 383
                             ***************************************************************99********************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             vpfe++v +a+ +e+++ e+L+++++E ++Vn+  +l++++de+v  +s+rd+vLkl+k+++P+++++   +  hn++ F++rf ea
  RcHm_v2.0_Chr5g0065621 384 VPFEYDV-IAQGWETIQCEDLKIDRNELVVVNCLNRLKHIHDETVMENSPRDAVLKLIKNINPNLFIHGIINGTHNTPFFATRFKEA 469
                             ******9.7****************************************************************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                             l +y alfd++ea++pre+e r+ +Ere  gr+i+n+vaceg er+er et++kW+ r  +aG+k++pl++++ k++k l + +++d
  RcHm_v2.0_Chr5g0065621 470 LLHYYALFDMFEATVPREDERRMIIEREKCGRDIMNIVACEGVERFERPETYKKWQIRNVRAGLKQLPLDQEELKKVKNLYKGYHND 556
                             *************************************************************************************77 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              +rvee+ +++++gWk+r L ++S W+
  RcHm_v2.0_Chr5g0065621 557 -FRVEEDGQWILQGWKGRILRALSLWT 582
                             .*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    
MKSWKTRAAR CRTIWRSKLL KNLSSYDVLN PNDPHSPNKA SLGESFSDTL LVSDSLFERQ  60
SLGNFENVGE ANKFFPNGEF DIIDKERYEL LSVARSHLVK GNLASDKKND VKNPTDGMKG  120
KKNHHREDGD YPEEGRSSKQ SVVSADDSEP QEMFDKVLLC QAEHHHREWE SCTPHCSMKR  180
EETEQLQQNR QPKGSKTNRS KRQNKDEEGV DLTTMLNQCA QAVASYEQGT ASELLKKIRQ  240
HSSPHGHATQ RLAHYFANGL EARLTGVGTP SFSPLFSRQT SAAEYLLAYQ VYTTSCPFKM  300
MSQLFANRTI MKLAKNETRL HIIDFGISYG FQWPFLIQHL SERPNGPPKL HITGIELPQR  360
GFRPRERVEE TGHRLARYCA KFNVPFEYDV IAQGWETIQC EDLKIDRNEL VVVNCLNRLK  420
HIHDETVMEN SPRDAVLKLI KNINPNLFIH GIINGTHNTP FFATRFKEAL LHYYALFDMF  480
EATVPREDER RMIIEREKCG RDIMNIVACE GVERFERPET YKKWQIRNVR AGLKQLPLDQ  540
EELKKVKNLY KGYHNDFRVE EDGQWILQGW KGRILRALSL WTPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-174GRAS family protein