PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 813aa    MW: 91599.5 Da    PI: 5.157
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.84e-1104368101373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+ cA+avs++d +   +lL+++++++sp gd  qRla++f+++L+ar+a++++++    ++ ++++++ ++ l+++++   +
  RcHm_v2.0_Chr5g0065581 436 LRNLLILCAQAVSTNDIRTSAELLKQIRQHSSPFGDGSQRLAHFFANGLEARMAGTGTGTQIFYTSLASKKTSAVDILKSYEVSLSA 522
                             6899***************************************************8888876677777777779************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k+s +  N++I + +e+++++Hi+Df+i +G+QWp L+q+L+ R++gpp+lRiTg++ p++g   +e +eetg+rLa+++e++
  RcHm_v2.0_Chr5g0065581 523 CPFKKMSIFFKNKMIFKMAEKATTLHIVDFGILYGFQWPILIQKLSMRAGGPPKLRITGIEVPQPGfrPAEWIEETGRRLARYCERF 609
                             *****************************************************************9*99****************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfefn+++++++e++++++L+v+++E+laVn++ + ++llde+v+++ +rd+vLkl+++l+P+++v++  +  +n++ F++rf e
  RcHm_v2.0_Chr5g0065581 610 KVPFEFNAIASQNWESIQVDDLKVERNEVLAVNCMSRFKNLLDETVEVNCPRDSVLKLIRRLKPDIFVHTIINGAYNAPFFVTRFRE 696
                             *********999*************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++sal+ds+++++pr+s er + E e+ gre++nv+aceg er+er et+++W+ r ++aG++ +pl+++ +k  +  ++  + 
  RcHm_v2.0_Chr5g0065581 697 ALFHFSALYDSFDVTIPRDSPERLMFESEFYGREAMNVIACEGIERVERAETYKQWQVRCQRAGLQLLPLDQELVKVFRDKVKAWYH 783
                             **************************************************************************************8 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                             + ++++++s+++++gWk+r +++ S+W
  RcHm_v2.0_Chr5g0065581 784 KDFTIDQDSDWMLQGWKGRIVYASSCW 810
                             88************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    
MDPTYTGLPD FMNDIDFDPM LPNSSQFPEI PNQYQFNQLS PDLNFFSNQF SIPPEPDSGN  60
LVPPISVSTE GESFSVPTTV SPGVDSPSSD DIDFSETVFK YVNQMLMEEN IEQKPIMFYD  120
PLGLRDTEKS FYDVLGQQYP FSPNQQPLYV DQPNQQPLYV DRKVESPDSY FSGNSSDFNA  180
SSSPSTGASK SVDSQSLGDY GEQKPSSSET SQSGDSGYQF NSHSNSQLSV PVTNSLSSFG  240
DGMSESSVNQ FLAQNIFTDS ESVLQFQRGL EEASKFLPKV NPLVIDLESS TMSPQVKGRV  300
PTVIVKREKS ERKNSPSRRR GRRKSPNGSR ETKNSPDGSR GRKNHEREDV DSEEGRSSKQ  360
SAIYEEEDEL SEMFDKVLLS TEGGNQSSCG SCGNNVDMQN EEGKNLQPNG QPQASNGEGR  420
KARAKKQGKK KETVDLRNLL ILCAQAVSTN DIRTSAELLK QIRQHSSPFG DGSQRLAHFF  480
ANGLEARMAG TGTGTQIFYT SLASKKTSAV DILKSYEVSL SACPFKKMSI FFKNKMIFKM  540
AEKATTLHIV DFGILYGFQW PILIQKLSMR AGGPPKLRIT GIEVPQPGFR PAEWIEETGR  600
RLARYCERFK VPFEFNAIAS QNWESIQVDD LKVERNEVLA VNCMSRFKNL LDETVEVNCP  660
RDSVLKLIRR LKPDIFVHTI INGAYNAPFF VTRFREALFH FSALYDSFDV TIPRDSPERL  720
MFESEFYGRE AMNVIACEGI ERVERAETYK QWQVRCQRAG LQLLPLDQEL VKVFRDKVKA  780
WYHKDFTIDQ DSDWMLQGWK GRIVYASSCW VPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein