PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 832aa    MW: 93796 Da    PI: 6.1971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.32.9e-1104568291373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+ cA+avs++d++  ++lL+++++++sp gd  qRla++f+++L+ar+a++++++      s +s+++ +++l+ +++   +
  RcHm_v2.0_Chr5g0065571 456 LRNLLILCAQAVSTNDFRTSTELLKQIRQHSSPFGDGSQRLAHFFANGLEARMAGTGTGTQ-FYYISVASKRKAVDKLKCYQVHLSA 541
                             6899***************************************************655554.335555556679************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ ++s +  N++Il+ +e+++++Hi+Df+i +G+QWp L+++L+ Rp+gpp+lRiTg++ p++g   +e +eetg+rLa++++++
  RcHm_v2.0_Chr5g0065571 542 CPFKRMSMFFKNKMILKMAEKATTLHIVDFGILYGFQWPILIHKLSMRPGGPPKLRITGIEVPQPGfrPAEWIEETGRRLARYCKRF 628
                             *****************************************************************9*99****************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfefn+++++++e++++e+L+v+++E+laVn++l+  +llde+v+++ +rd+vLkl+++l+P+++v++  +  +n++ F++rf e
  RcHm_v2.0_Chr5g0065571 629 NVPFEFNAIASQNWESIQVEHLKVERNEVLAVNCMLRFTNLLDETVEVNCPRDSVLKLIRRLKPDIFVHTIVNGAYNAPFFVTRFRE 715
                             *********999*************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++sal+d++++++pr+s er + E e+ g+e++nv+aceg +r+er et+++W+ r ++aG+k +pl+++ +k  +  ++  + 
  RcHm_v2.0_Chr5g0065571 716 ALFHFSALYDAFDVNIPRDSPERLVFETEFYGQEAMNVIACEGIQRVERAETYKQWQVRCQRAGLKVLPLNQELVKAFRDKVKAWYH 802
                             **************************************************************************************8 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                             + + ++++s+++++ Wk+r +++ S+W
  RcHm_v2.0_Chr5g0065571 803 KDFAIDQDSDWMLQAWKGRIVYASSCW 829
                             88************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    
MDPPHTGLPD FMNDIDFESM LPNSSQFPEI PNQYQFNQLS PDLDSLSNQF SIPPEPVSGN  60
FVPPISVSTE GESLLPNGGS FSLPTTVSPG VDSKSSDDLD FSETVFKYVN QMLMEENIEE  120
KPLMLYDDPL GLRGTEKSFY EVLGQQYPFS PNQQPLYDDQ PNQQPLYVDR KDESPDSYFS  180
GNSSDFNTGS SPSAGTSNSV DSQSLGDYGE QKPSLSETSH SRDSVYQFNS HSNSNSRLSV  240
PLTNSLSSFG GGMSESSVNQ FLAQNIFTDS ESVLQFQRGL EQASKFLPKV NPLVINLESS  300
TVSPEVKGHA PTDIVNKEKS ERKNRPSRRR GRRKSPNGSR ERKNSPDGSR ERKNSPDGSR  360
GRKNHEREDV DSEEGRSSKQ SAIYKGEEDE LSEMFDKVLL FDGSNLSSCG SCGDNVDVQN  420
EESKNLQPNG QPQASNDEGG TARAKKQGKK KETVDLRNLL ILCAQAVSTN DFRTSTELLK  480
QIRQHSSPFG DGSQRLAHFF ANGLEARMAG TGTGTQFYYI SVASKRKAVD KLKCYQVHLS  540
ACPFKRMSMF FKNKMILKMA EKATTLHIVD FGILYGFQWP ILIHKLSMRP GGPPKLRITG  600
IEVPQPGFRP AEWIEETGRR LARYCKRFNV PFEFNAIASQ NWESIQVEHL KVERNEVLAV  660
NCMLRFTNLL DETVEVNCPR DSVLKLIRRL KPDIFVHTIV NGAYNAPFFV TRFREALFHF  720
SALYDAFDVN IPRDSPERLV FETEFYGQEA MNVIACEGIQ RVERAETYKQ WQVRCQRAGL  780
KVLPLNQELV KAFRDKVKAW YHKDFAIDQD SDWMLQAWKG RIVYASSCWV PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein