PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065561
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 729aa    MW: 81507.3 Da    PI: 5.3036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3703.1e-1133547241373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+ lL+ cA+avs +d e a++lL+++ +++sp gd  qRla++f++AL+arla++++++y al +++ s    ++ l++++++  +
  RcHm_v2.0_Chr5g0065561 354 LRALLILCAQAVSVDDRETASELLKQIMQHSSPFGDCAQRLAHCFANALEARLAGTGTQIYTALCAKRMS---AADMLKFYQAYIAA 437
                             5789**********************************************************99999998...99************ PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P++k+s + aN++Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTgv+ p sg   ke+++etg+rLak+++++
  RcHm_v2.0_Chr5g0065561 438 CPFMKMSMIFANHMILKAAEKAETLHIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGVELPLSGfrPKERVQETGHRLAKYCKRF 524
                             ***************************************************************9999******************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+ + +ak++e++++++L+v+++E+laVn+  + ++llde+v ++s+rd+vL+l+++l+P+v+v +  + ++ ++ F+ rf e
  RcHm_v2.0_Chr5g0065561 525 NVPFEYIA-IAKKWETVQFDDLKVQRNEVLAVNCLCRFKNLLDETVVVNSPRDTVLNLIRKLNPDVFVQSVVNGSYHAPFFVSRFRE 610
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++salfd+++++lpre+  r   E+e++gre+vn+vaceg+er+ r et+++W+ r ++aGF+++pl+ ++++++k  +++ +s
  RcHm_v2.0_Chr5g0065561 611 ALFHFSALFDMFDNNLPREDLMRLGFEKEFIGREVVNIVACEGSERTVRPETYKQWQVRNMRAGFRQLPLDREVMNKIKDKVKTGYS 697
                             **************************************************************************************9 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                               + v+e+  ++++gWk+r ++   +W
  RcHm_v2.0_Chr5g0065561 698 PDFVVDEDGRWMLQGWKGRIMFCSACW 724
                             99**********************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MDPRFSEFPN FNDQTLLPDM LNEYPSSDPF EDLSFSDPNP SNSALSSSFS PEGDDVEFSD  60
SVLKYINQVL MEEDMESKPC MFPDPLALQA TEESLYEVIG GGKYPISQDQ NPLCVDQNVQ  120
SPDGGYFSGS SSDSSSSPGS SVDSCPVTAQ FVGTRSSILQ NPIPENFVFQ SPSRARSQSS  180
SDGYGNGNGM VASYRSELMV PDVLSKNELL VQFNLGAEEG SKFLPRGQLI SAEGNKMYAV  240
VNKKAGDVVV TTQKNGSEQF HVGSRGKKNH QREDIDLEDG RSNKQPAVFM DDEEGELSDI  300
FDKVLLCKPL ESKDDEASQN GANNGLQQDV QSVGIGNGKG RGKIHSNKKE VIDLRALLIL  360
CAQAVSVDDR ETASELLKQI MQHSSPFGDC AQRLAHCFAN ALEARLAGTG TQIYTALCAK  420
RMSAADMLKF YQAYIAACPF MKMSMIFANH MILKAAEKAE TLHIIDFGIL YGFQWPALIH  480
CLSRRPGGPP KLRITGVELP LSGFRPKERV QETGHRLAKY CKRFNVPFEY IAIAKKWETV  540
QFDDLKVQRN EVLAVNCLCR FKNLLDETVV VNSPRDTVLN LIRKLNPDVF VQSVVNGSYH  600
APFFVSRFRE ALFHFSALFD MFDNNLPRED LMRLGFEKEF IGREVVNIVA CEGSERTVRP  660
ETYKQWQVRN MRAGFRQLPL DREVMNKIKD KVKTGYSPDF VVDEDGRWML QGWKGRIMFC  720
SACWALPRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein