PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065541
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 707aa    MW: 79438 Da    PI: 5.2972
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.52.3e-1133327021373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+ lL+ cA+avs +d e a++lL+++ +++sp gd  qRla++f++AL+arla++++++y al++++ s    ++ l++++++  +
  RcHm_v2.0_Chr5g0065541 332 LRALLILCAQAVSVDDRETASELLKQIMQHSSPFGDCAQRLAHCFANALEARLAGTGTQIYTALSTKRMS---AADMLKYYQAYITA 415
                             5789************************************************************999998...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k+s + aN +Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTgv+ p sg   +e+++etg+ Lak+++++
  RcHm_v2.0_Chr5g0065541 416 CPLNKMSLIFANDMILKAAEKAETLHIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGVELPLSGfrPEERVQETGHHLAKYCRRF 502
                             ***************************************************************9999******************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+ + +ak+++++++++L+v+++E+laVn+v + ++llde+v ++++rd+vLkl+++l+P+++v++  + ++ ++ F++rf e
  RcHm_v2.0_Chr5g0065541 503 NVPFEYYA-IAKKWDTVQFDDLKVQRNEVLAVNCVCRFKNLLDETVVVNNPRDTVLKLIRKLNPDIFVHSVVNGSYHAPFFVARFRE 588
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++sa+fd+++++lpre++ r   E+e++gre+ n+vaceg+er+ r et+++W+ r ++aGF+++pl+ ++++++k  +++ +s
  RcHm_v2.0_Chr5g0065541 589 ALFHFSAFFDMFDNNLPREDQMRLGFEKEFIGREVLNIVACEGSERIVRPETYKQWQVRNMRAGFRQLPLDREVMNKIKDKVKMGYS 675
                             **************************************************************************************9 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                               + v+e+  +++lgWk+r ++   +W
  RcHm_v2.0_Chr5g0065541 676 PDFVVDEDGRWMLLGWKGRIMFGSACW 702
                             99*********************9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    
MDPRFSEFPN FNDQTLLPDM LNEYPSSDPF EDLSFSDPNR SNSSLSSSFS AEGDDCEFSD  60
CVLKYINQVL MEEDMESKPC MFHDPLALQA TEESLYEVIG GGKYPISQDQ NPLCVDQNVE  120
SPDGGYSSGS FTDSSSSPGP SVNSCPVTAQ FVETSSSILE IPIPENFVFQ SPSRARSQLS  180
SSSKNELLVQ FNLGAEEGRK FLPRGQLISV EGNKMYAVVN KKAGDAVVTT QKNGSEQFHV  240
GSRGKKNHQR EDIVLEDGRS NKQPAVYMDD EEGELSDIFD KVLLCKPLES KDDEASQNGA  300
NIGLQQDVQS VGIGNGKGRG MIHGNKKEVI DLRALLILCA QAVSVDDRET ASELLKQIMQ  360
HSSPFGDCAQ RLAHCFANAL EARLAGTGTQ IYTALSTKRM SAADMLKYYQ AYITACPLNK  420
MSLIFANDMI LKAAEKAETL HIIDFGILYG FQWPALIHCL SRRPGGPPKL RITGVELPLS  480
GFRPEERVQE TGHHLAKYCR RFNVPFEYYA IAKKWDTVQF DDLKVQRNEV LAVNCVCRFK  540
NLLDETVVVN NPRDTVLKLI RKLNPDIFVH SVVNGSYHAP FFVARFREAL FHFSAFFDMF  600
DNNLPREDQM RLGFEKEFIG REVLNIVACE GSERIVRPET YKQWQVRNMR AGFRQLPLDR  660
EVMNKIKDKV KMGYSPDFVV DEDGRWMLLG WKGRIMFGSA CWAPSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein