PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 602aa    MW: 68153.3 Da    PI: 6.5155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.23.9e-9429759774373
                    GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeel 158
                             s+++l++++++  v+P++k+  + aN +Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTg++ p+sg   +e +
  RcHm_v2.0_Chr5g0065531 297 SADSLKFYQAYIAVCPFMKLLMIFANDMILKAAEKAETLHIIDFGIRYGFQWPALIHCLSRRPGGPPKLRITGLEFPSSGfrPEEGV 383
                             678999*************************************************************************9******* PP

                    GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                             +etg+rLak++++++vpfe+   +ak++e+l++++Lrv+++E+laVn+  + ++llde+v ++s+rd+vL+l+++l+P+v+v +  +
  RcHm_v2.0_Chr5g0065531 384 QETGHRLAKYCRRFNVPFEYYG-IAKKWETLQFDDLRVQRNEVLAVNCLNRFKYLLDETVVVNSPRDTVLNLIRNLNPDVFVQSVVN 469
                             **********************.7*************************************************************** PP

                    GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                              +h ++ F+ rf eal ++salfd+l+++lpre++ r   E+e++gre+vn+vaceg++r+ r et+++W+ r ++aGF+++pl+ +
  RcHm_v2.0_Chr5g0065531 470 GSHHAPFFVPRFREALFHFSALFDMLDTNLPREDQMRLGFEKEFIGREVVNIVACEGFQRIVRPETYKQWQIRNMRAGFRQLPLDRE 556
                             *************************************************************************************** PP

                    GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                             +++++k  +++ +   + v+e+ ++++  Wk+r L++  +W
  RcHm_v2.0_Chr5g0065531 557 VMNKIKDKVKMGYHPSFVVDEDGHWMLHEWKGRILYASACW 597
                             *************999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    
MDPRFSEFPS FNDQTLLPDM LSEYPSSDPS QDLSFLDPNP SNSSSSFSPE GDDSEFSDSV  60
LKYINQVLIK EEMQSKPCMF HDPLALQATE ESLHEIIGGG KNPTSQHLNP LCVDQNVYGN  120
GNGNGMLGSY RSELIVPDML SKSELLLQFN LGAEEGSKFL PRGQLISAEG NKPYAVADRK  180
AGDVVVPTQK NGSEHFRVGS RGKKNHQRED IDLEDGRSNK QSAVYMDGEE GELSHIFDKV  240
LLSKPIKSKD DQVSQNGANN SPQQDGLSVG IGNGKVCGKN QGNKKEVIDL RALLISSADS  300
LKFYQAYIAV CPFMKLLMIF ANDMILKAAE KAETLHIIDF GIRYGFQWPA LIHCLSRRPG  360
GPPKLRITGL EFPSSGFRPE EGVQETGHRL AKYCRRFNVP FEYYGIAKKW ETLQFDDLRV  420
QRNEVLAVNC LNRFKYLLDE TVVVNSPRDT VLNLIRNLNP DVFVQSVVNG SHHAPFFVPR  480
FREALFHFSA LFDMLDTNLP REDQMRLGFE KEFIGREVVN IVACEGFQRI VRPETYKQWQ  540
IRNMRAGFRQ LPLDREVMNK IKDKVKMGYH PSFVVDEDGH WMLHEWKGRI LYASACWAHS  600
RT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-144GRAS family protein