PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065511
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 548aa    MW: 61767.6 Da    PI: 8.168
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.33.2e-971935431373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+ lL++cA avs +d + a++lL+++ +++sp gd +qRla++f++AL+arla++++++y al++++ s    +++l++++++  v
  RcHm_v2.0_Chr5g0065511 193 LRALLISCAVAVSVDDRKTASELLKQIMQHSSPFGDCTQRLAHCFANALEARLAGTGTQIYTALTTKRMS---AADSLKFYQAYIAV 276
                             5789*********************************************************999999998...99************ PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P++k+  + aN +Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTg++ p+sg   +e ++etg+rLak+++ +
  RcHm_v2.0_Chr5g0065511 277 CPFMKLLMIFANDMILKAAEKAETLHIIDFGIRYGFQWPALIHCLSRRPGGPPKLRITGLEFPSSGfrPEEGVQETGHRLAKYCRGF 363
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +v+fe++  +ak++e+l++++L+v+++E+laVn+  + ++llde+v ++s+rd+vL+l+++l+P+v+v +  + +h ++ F+ rf e
  RcHm_v2.0_Chr5g0065511 364 NVHFEYHG-IAKKWETLQVDDLKVQRNEVLAVNCLNRFKYLLDETVVVNSPRDTVLNLIRNLNPDVFVQSVVNGSHHAPFFVPRFRE 449
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++salfd+l+++lpre++ r   E+e                     et+++W+ r ++aGF+++pl+ ++++++k  +++ + 
  RcHm_v2.0_Chr5g0065511 450 ALFHFSALFDMLDTNLPREDQMRLGFEKE--------------------PETYKQWQIRNMRAGFRQLPLDREVMNKIKDKVKMGYH 516
                             ************************99999....................689**********************************9 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                               + v+e+  +l+  Wk+r +++  +W
  RcHm_v2.0_Chr5g0065511 517 PSFVVDEDGRWLLHEWKGRIMYASACW 543
                             99************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MESKPCMFHD PLALQATVES LHEVIGGGKY PTSQDLNPLC VDQDVYGNGN GMAGSYRSEL  60
MFLPRGQLIS AEGNKPYAVA DRKAGDVVVP TQKNGSEHFR VVSRGKKNHQ REDIDLEDGR  120
SNKQSTVYMD GEEGELCDIF DKVLLSKPIK SKDDQVSQNG ANNSLQQDGL SVGIGNGKVC  180
GKNQGNKKEV IDLRALLISC AVAVSVDDRK TASELLKQIM QHSSPFGDCT QRLAHCFANA  240
LEARLAGTGT QIYTALTTKR MSAADSLKFY QAYIAVCPFM KLLMIFANDM ILKAAEKAET  300
LHIIDFGIRY GFQWPALIHC LSRRPGGPPK LRITGLEFPS SGFRPEEGVQ ETGHRLAKYC  360
RGFNVHFEYH GIAKKWETLQ VDDLKVQRNE VLAVNCLNRF KYLLDETVVV NSPRDTVLNL  420
IRNLNPDVFV QSVVNGSHHA PFFVPRFREA LFHFSALFDM LDTNLPREDQ MRLGFEKEPE  480
TYKQWQIRNM RAGFRQLPLD REVMNKIKDK VKMGYHPSFV VDEDGRWLLH EWKGRIMYAS  540
ACWAPSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein